PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr4g060950.1
Common NameMTR_4g060950
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family LBD
Protein Properties Length: 191aa    MW: 20737.4 Da    PI: 4.9284
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr4g060950.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260131.92.7e-41241241100
           DUF260   1 aCaaCkvlrrkCakd.CvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 
                      +CaaCk+lrr+Ca+d Cvlapyfp ++p+kf ++h++FGasn++k+l++lpe++r da++s+vyeA ar+rdPvyG++g i +lq+q+++l+a+
  Medtr4g060950.1  24 PCAACKILRRRCAADkCVLAPYFPPTDPAKFTIAHRVFGASNIIKFLQELPEDQRADAVTSMVYEASARVRDPVYGCAGAICQLQKQVNELQAQ 117
                      7***********9877****************************************************************************** PP

           DUF260  94 lallkee 100
                      la+ ++e
  Medtr4g060950.1 118 LAKSQAE 124
                      **99876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089123.66923125IPR004883Lateral organ boundaries, LOB
PfamPF031955.6E-4124122IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 191 aa     Download sequence    Send to blast
MESATSDTFT APTSSSTQAV VMSPCAACKI LRRRCAADKC VLAPYFPPTD PAKFTIAHRV  60
FGASNIIKFL QELPEDQRAD AVTSMVYEAS ARVRDPVYGC AGAICQLQKQ VNELQAQLAK  120
SQAEVVNMKL QQTNLVALFL EISQSPQESP QQISVDDFIQ SPSHSDGHHI GLNFLDDNTG  180
LCSGWDTLWT *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A3e-40111272113LOB family transfactor Ramosa2.1
5ly0_B3e-40111272113LOB family transfactor Ramosa2.1
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in young shoots, stems, leaves and flowers. {ECO:0000269|PubMed:12068116}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr4g060950.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1492680.0AC149268.21 Medicago truncatula clone mth2-94j16, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003606493.11e-141LOB domain-containing protein 11
SwissprotQ9SK083e-74LBD11_ARATH; LOB domain-containing protein 11
TrEMBLG7JRG81e-139G7JRG8_MEDTR; Lateral organ boundaries (LOB) domain protein
STRINGAES886901e-140(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF130334106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28500.16e-73LOB domain-containing protein 11
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]