PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr4g057230.1
Common NameMTR_4g057230
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family C2H2
Protein Properties Length: 294aa    MW: 32129.2 Da    PI: 6.8419
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr4g057230.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2120.00066113135123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      y+C+ C+++F++   L  H  +H
  Medtr4g057230.1 113 YECKTCNRTFPSFQALGGHRASH 135
                      99**********99999998887 PP

2zf-C2H213.30.00025208230123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      ++C++Cg  F++   L  H+r+H
  Medtr4g057230.1 208 HECSICGSEFTSGQALGGHMRRH 230
                      78********************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576678.52E-9112135No hitNo description
PfamPF139125.4E-13113137IPR007087Zinc finger, C2H2
SMARTSM003550.052113135IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.408113140IPR007087Zinc finger, C2H2
PROSITE patternPS000280115135IPR007087Zinc finger, C2H2
SuperFamilySSF576678.52E-9203230No hitNo description
PROSITE profilePS501579.743208230IPR007087Zinc finger, C2H2
PfamPF139126.0E-11208231IPR007087Zinc finger, C2H2
SMARTSM003550.019208230IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280210230IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MEEFVMEEKM VGFSKKDATY IAKGKRTKRL RFLSPCGVVA MASSCSSDES NIDLEDEDED  60
DEEEDLAKCL ILLAQGGNHR EDGGVVDENK RVKGSHGNKK IGETSTKLGL YIYECKTCNR  120
TFPSFQALGG HRASHKKPKI MAEEKKPPSP PSQQPRPQSS SHDSQSDNLV ANSDEYEEAE  180
KPRGPMVSFQ MGNHGLKAAI NGNKAKIHEC SICGSEFTSG QALGGHMRRH RVSVANAAAV  240
AAPDERVRPR NILQLDLNLP APEEDIRESK FQFPATQKSM VMAAAPALVG CHY*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.10520.0root
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr4g057230.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1260070.0AC126007.16 Medicago truncatula clone mth2-11o4, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003606327.10.0zinc finger protein ZAT5
TrEMBLG7JN940.0G7JN94_MEDTR; C2H2-type zinc finger protein, putative
STRINGAES885240.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF58634141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28200.13e-41C2H2 family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]