PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr4g052950.1
Common NameMTR_4g052950, NF-YB4
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family NF-YB
Protein Properties Length: 141aa    MW: 15541.4 Da    PI: 5.0029
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr4g052950.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB40.85.4e-13499595
            NF-YB  5 drflPianvsrimkkvlPa...nakis..kdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyreleg 95
                      ++lP + v r++k+ l +   ++ i+  kda     e +  fi ++++ a+d c++ kr+ in++d++ al +  f ++v plk  l+++r+ ++
  Medtr4g052950.1  4 TEELPKTIVRRVVKEKLSTcsdDGDIAvhKDALLAFSESARIFIHYLSATANDICRESKRQIINAEDVFKALEETEFAEFVGPLKDSLEEFRKKNA 99
                     567999999999999987522245544338999999********************************************************8765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.103.9E-325130IPR009072Histone-fold
PfamPF008081.6E-9675IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
SuperFamilySSF471131.38E-247120IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 141 aa     Download sequence    Send to blast
MAETEELPKT IVRRVVKEKL STCSDDGDIA VHKDALLAFS ESARIFIHYL SATANDICRE  60
SKRQIINAED VFKALEETEF AEFVGPLKDS LEEFRKKNAG KKAAVPKGKG DEKGKGDEEK  120
RKRKAEGEPS DKGDGVDDDQ *
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.111050.0flower| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr4g052950.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJQ9182770.0JQ918277.1 Medicago truncatula nuclear transcription factor Y subunit B4 (NF-YB4) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013455824.14e-96DNA polymerase epsilon subunit 3
TrEMBLI3TAW28e-95I3TAW2_MEDTR; Class 2 transcription repressor NC2, beta subunit
STRINGXP_004506183.11e-72(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF118633236
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27470.12e-41nuclear factor Y, subunit B11
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]