PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr4g050300.1
Common NameMTR_4g050300
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family YABBY
Protein Properties Length: 180aa    MW: 20198.2 Da    PI: 8.8315
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr4g050300.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY208.72.1e-6471596169
            YABBY   6 sseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvsse 99 
                      ++e+vCyv+CnfCntilav+vP++sl+++vtvrCGhC++llsvn+     +     +l +  k+++ +e+ +++          e  s+s + +
  Medtr4g050300.1   7 ATERVCYVHCNFCNTILAVNVPYSSLLTIVTVRCGHCANLLSVNMVAPLLQPFPPPQLPQPQKQHIIDEEASSK----------EIGSSSSKCN 90 
                      79****************************************99887776666666666666666665544332..........2223333333 PP

            YABBY 100 klsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfg 169
                      k+ + e  e pr+pp irP ekr rvPsaynrfikeeiqrikasnPdishreafs aaknWahfP+ihfg
  Medtr4g050300.1  91 KIASFEAVEHPRIPP-IRPIEKRHRVPSAYNRFIKEEIQRIKASNPDISHREAFSSAAKNWAHFPHIHFG 159
                      444556778899999.9****************************************************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046909.3E-697159IPR006780YABBY protein
SuperFamilySSF470952.23E-7106154IPR009071High mobility group box domain
Gene3DG3DSA:1.10.30.101.2E-4114154IPR009071High mobility group box domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007275Biological Processmulticellular organism development
Sequence ? help Back to Top
Protein Sequence    Length: 180 aa     Download sequence    Send to blast
MSMDMIATER VCYVHCNFCN TILAVNVPYS SLLTIVTVRC GHCANLLSVN MVAPLLQPFP  60
PPQLPQPQKQ HIIDEEASSK EIGSSSSKCN KIASFEAVEH PRIPPIRPIE KRHRVPSAYN  120
RFIKEEIQRI KASNPDISHR EAFSSAAKNW AHFPHIHFGK QQAKLDHGEG TREKTNGFY*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.30500.0flower
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed in subepidermal cells of anlagen regions, then in abaxial part of primordia and finally in differentiating organs. Levels decrease in differentiated organs. In embryo, expressed from the heart stage in the abaxial domain of the cotyledon primordia and decrease as the embryo matures. In stamen, expression restricted to the abaxial region differentiating into the connective. In gynoecium, expressed in the abaxial cell layers differentiating into the valves. {ECO:0000269|PubMed:10457020}.
UniprotTISSUE SPECIFICITY: Expressed at low levels in abaxial regions of lateral aerial organ primordia leading to cotyledons, leaves, flower meristems, sepals, petals, stamen and carpels, but not in roots. {ECO:0000269|PubMed:10457020}.
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the abaxial cell fate determination during embryogenesis and organogenesis. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr4g050300.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0908111e-126BT090811.1 Soybean clone JCVI-FLGm-5K20 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003605973.11e-132putative axial regulator YABBY 2 isoform X1
SwissprotQ9XFB01e-69YAB2_ARATH; Putative axial regulator YABBY 2
TrEMBLG7JER51e-131G7JER5_MEDTR; Plant-specific transcription factor YABBY family protein
STRINGAES881701e-132(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF112434112
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08465.17e-51YABBY family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]
  2. Sacharowski SP, et al.
    SWP73 Subunits of Arabidopsis SWI/SNF Chromatin Remodeling Complexes Play Distinct Roles in Leaf and Flower Development.
    Plant Cell, 2015. 27(7): p. 1889-906
    [PMID:26106148]