PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr4g008070.1
Common NameMTR_4g008070
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family GATA
Protein Properties Length: 97aa    MW: 10933.3 Da    PI: 6.4111
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr4g008070.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA48.71e-154580134
             GATA  1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkg 34
                     C++C+ ++  Tp++Rrgp+g++tLCnaCGl+++ k+
  Medtr4g008070.1 45 CRQCNISEkcTPMMRRGPEGPRTLCNACGLMWANKE 80
                     ********************************9886 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004012.2E-63992IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.95E-103988No hitNo description
Gene3DG3DSA:3.30.50.102.0E-134381IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.95E-84479No hitNo description
PROSITE patternPS0034404572IPR000679Zinc finger, GATA-type
PfamPF003203.8E-134580IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 97 aa     Download sequence    Send to blast
MQRNKGRFTS AKSKNDESAS AEMNCGTSEG LMADNDGSQQ QDYVCRQCNI SEKCTPMMRR  60
GPEGPRTLCN ACGLMWANKE KWEVLEDWPY NLRLYA*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.160918e-70flower| glandular trichome| leaf| root| seed
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013454573.11e-67GATA type zinc finger transcription factor family protein
SwissprotQ8H1G01e-30GAT28_ARATH; GATA transcription factor 28
TrEMBLA0A072UFS72e-67A0A072UFS7_MEDTR; GATA type zinc finger transcription factor family protein
STRINGGLYMA08G23720.21e-34(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF136512325
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51600.28e-32ZIM-LIKE 2
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]