PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr3g498695.1
Common NameMTR_3g498695
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family bHLH
Protein Properties Length: 486aa    MW: 53390 Da    PI: 6.3798
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr3g498695.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH361.2e-11301343754
                      HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
              HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                      ++ErrRR+++N+++  Lr+++Pk +      K++ a+iL  A+eY+k+L
  Medtr3g498695.1 301 MAERRRRKKLNDRLYMLRSVVPKiS------KMDRASILGDAIEYLKEL 343
                      79*********************66......****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.764294343IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.44E-16297361IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.8E-9300343IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.2E-14300349IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.74E-12301347No hitNo description
Gene3DG3DSA:4.10.280.107.8E-16301356IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048737.57E-7414474No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010440Biological Processstomatal lineage progression
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0050826Biological Processresponse to freezing
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 486 aa     Download sequence    Send to blast
MLSRMNSNNN GWMEEREDEN NTTNPNTPSS ASPAFIHNHN NKQQDFSSFI KPMLGEIDED  60
DEQWYIRDMS FSSAPNLDNV LLHTINDSVS SSCSPSSSVF NTLLHPEPTP SNSNHLQYFL  120
PPQNHKPINP FDLPCELGFL DHQASTMAAS SFMGSFVDFA SKTPLTATAT TTQLLSLPHL  180
PQINNAFMGF QNSQEGSGKS LFLRPLDSLP SSGTQPTLFQ KRAALRKNMG KCEIGEGSDK  240
KRKFSGGDEI DDLSFDGSGL NYDSDDLTES NGKNIGNGSN GNSTVTDQKG KKKGMPAKNL  300
MAERRRRKKL NDRLYMLRSV VPKISKMDRA SILGDAIEYL KELLQRINDL HNELESTPAG  360
SSLTPASSLH PLTPTPSSLP GRIKEELCPS SLPSPNGQPA RVEVRLREGR AVNIHMFCTR  420
KPGLLLSTMR ALDNLGLDIQ QAVISCFNGF AMDIFRAEQC KEGQDVHPEQ IKAVLLDSAG  480
FNGMI*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1290308KKKGMPAKNLMAERRRRKK
2302309ERRRRKKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHM9899280.0HM989928.1 Glycine max ICEd mRNA, complete cds.
GenBankFJ3932260.0FJ393226.1 Glycine max inducer of CBF expression 4 (ICE4) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013461649.10.0BHLH transcriptional factor
SwissprotQ9LSE21e-132ICE1_ARATH; Transcription factor ICE1
TrEMBLA0A072V0Y60.0A0A072V0Y6_MEDTR; BHLH transcriptional factor
STRINGPOPTR_0012s10780.11e-174(Populus trichocarpa)
STRINGGLYMA04G37750.21e-175(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24143482
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G26744.41e-120bHLH family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]