PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr3g466830.1
Common NameMTR_3g466830
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family M-type_MADS
Protein Properties Length: 162aa    MW: 18848.7 Da    PI: 9.1089
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr3g466830.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF38.81.2e-121249542
                     SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
           SRF-TF  5 nksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                     ++s r++t+ kR++ ++KK +EL +LC+++ + i++s+
  Medtr3g466830.1 12 SDSARKITYNKRKTSLIKKVNELTTLCGIDGCAIVYSE 49
                     7899********************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006613.946149IPR002100Transcription factor, MADS-box
SMARTSM004321.6E-15159IPR002100Transcription factor, MADS-box
CDDcd002665.94E-22184No hitNo description
SuperFamilySSF554551.28E-20294IPR002100Transcription factor, MADS-box
PRINTSPR004041.6E-5222IPR002100Transcription factor, MADS-box
PfamPF003192.3E-131249IPR002100Transcription factor, MADS-box
PRINTSPR004041.6E-52237IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 162 aa     Download sequence    Send to blast
MRKKVKLAFM VSDSARKITY NKRKTSLIKK VNELTTLCGI DGCAIVYSEF HSEPEVWPSP  60
WEVQKVLTKF KSYSEFEQGK KKLNQESYLR ERIMKSKEQL MKLEKNNWET EKSLILFQCL  120
VKEDFVDTLN SNVLNDLAWE INEKLKEITS KANELDTSAT N*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013460430.11e-114MADS-box transcription factor family protein
TrEMBLA0A072UZC21e-114A0A072UZC2_MEDTR; MADS-box transcription factor family protein
STRINGPOPTR_0005s00420.13e-55(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1630237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.15e-40AGAMOUS-like 80
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]