PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr3g112440.1
Common NameMTR_3g112440
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family ERF
Protein Properties Length: 228aa    MW: 25452.4 Da    PI: 5.3634
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr3g112440.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.24.6e-193787155
              AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                     + ykGVr++  +g+WvAeIr+p   + r  r +lg+f t  eAa a++aa++kl+g
  Medtr3g112440.1 37 CPYKGVRQRT-WGKWVAEIREP---N-RgSRLWLGTFETSLEAALAYDAAALKLYG 87
                     68*****999.**********8...3.35************************987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103222.263895IPR001471AP2/ERF domain
SMARTSM003801.9E-3538101IPR001471AP2/ERF domain
SuperFamilySSF541711.77E-203895IPR016177DNA-binding domain
PfamPF008479.3E-143887IPR001471AP2/ERF domain
CDDcd000181.36E-173996No hitNo description
PRINTSPR003672.3E-93950IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.2E-303996IPR001471AP2/ERF domain
PRINTSPR003672.3E-96177IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    Send to blast
MKSGMEVEER KKLKKPQQAI SRKGCMKGKG GPENPSCPYK GVRQRTWGKW VAEIREPNRG  60
SRLWLGTFET SLEAALAYDA AALKLYGSRA KLNLPEISTS VKSEGQQSSP DTQIVQMEDP  120
YHPQGNHNTG NNTCLGFNTN PYPTVSMAYQ PLNNNNNNST LSFPFDTNSN PIDQTYKDFF  180
PPLDDSIWPE DAMSIDFPIN YASSRMITEE NLADGSVWDS LQTPWCM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-203995360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1815ERKKLKKP
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr3g112440.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013462180.21e-168dehydration-responsive element-binding protein 2D
TrEMBLA0A072VDG81e-170A0A072VDG8_MEDTR; Dehydration-responsive element-binding protein
STRINGGLYMA04G03070.21e-71(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF25623380
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75490.14e-35ERF family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]