PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr3g071590.1
Common NameMTR_3g071590
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family LBD
Protein Properties Length: 160aa    MW: 17933.6 Da    PI: 7.8388
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr3g071590.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260140.55.5e-4481071100
           DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 
                      +Ca+Ck+lrr+CakdC++apyfp+++pkkfa+vhk+FGasnv+k+l++lp ++r da+sslvyeA+ar++dPvyG+vg i+ lq+q+++l+ +l
  Medtr3g071590.1   8 PCASCKLLRRRCAKDCIFAPYFPSHDPKKFAIVHKVFGASNVSKMLQELPIQQRADAVSSLVYEANARVKDPVYGCVGAISYLQNQVSELQMQL 101
                      7********************************************************************************************* PP

           DUF260  95 allkee 100
                      a++++e
  Medtr3g071590.1 102 AVAQAE 107
                      *99987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089126.7197108IPR004883Lateral organ boundaries, LOB
PfamPF031951.5E-438105IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 160 aa     Download sequence    Send to blast
MGGNTTSPCA SCKLLRRRCA KDCIFAPYFP SHDPKKFAIV HKVFGASNVS KMLQELPIQQ  60
RADAVSSLVY EANARVKDPV YGCVGAISYL QNQVSELQMQ LAVAQAEILC IQMKHDDQPL  120
MQNQEIALDH KPYDLPQYFN FPSSSNVIHH DSFSRERIF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A6e-4741097112LOB family transfactor Ramosa2.1
5ly0_B6e-4741097112LOB family transfactor Ramosa2.1
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed predominantly in roots, and at low levels in shoots, floral stems and open flowers. {ECO:0000269|PubMed:12068116}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr3g071590.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCR3786621e-179CR378662.1 M.truncatula DNA sequence from clone MTH2-41N19 on chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003600972.11e-117LOB domain-containing protein 12
SwissprotQ8LBW31e-71LBD12_ARATH; LOB domain-containing protein 12
TrEMBLG7J2B81e-115G7J2B8_MEDTR; Lateral organ boundaries (LOB) domain protein
STRINGAES712231e-116(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16643497
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30130.16e-74LBD family protein
Publications ? help Back to Top
  1. Penfield S, et al.
    Reserve mobilization in the Arabidopsis endosperm fuels hypocotyl elongation in the dark, is independent of abscisic acid, and requires PHOSPHOENOLPYRUVATE CARBOXYKINASE1.
    Plant Cell, 2004. 16(10): p. 2705-18
    [PMID:15367715]
  2. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]