PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr3g031660.1
Common NameMTR_3g031660
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family LBD
Protein Properties Length: 178aa    MW: 19833.4 Da    PI: 5.6576
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr3g031660.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260138.72e-4371061100
           DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 
                      +Ca+Ck+lrr+C+++C++apyfp+++p+kf +vhk+FGasn++k+l++lp ++r++a++slv+eA+ar+rdPvyG+vg i+ lq+q++ql+ +l
  Medtr3g031660.1   7 PCASCKLLRRRCTQECIFAPYFPSDDPRKFSIVHKVFGASNISKMLQELPIHQRSEAVNSLVFEANARVRDPVYGCVGAISYLQSQVSQLQMQL 100
                      7********************************************************************************************* PP

           DUF260  95 allkee 100
                      a++++e
  Medtr3g031660.1 101 AMAQSE 106
                      **9987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089126.7486107IPR004883Lateral organ boundaries, LOB
PfamPF031957.0E-437104IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009965Biological Processleaf morphogenesis
Sequence ? help Back to Top
Protein Sequence    Length: 178 aa     Download sequence    Send to blast
MGSGSSPCAS CKLLRRRCTQ ECIFAPYFPS DDPRKFSIVH KVFGASNISK MLQELPIHQR  60
SEAVNSLVFE ANARVRDPVY GCVGAISYLQ SQVSQLQMQL AMAQSEILCI QMQQESTTVT  120
NSLPTHVDDQ DDKLMILSES SNCYGVLPQY INFPSSSSSS SNVFQDYEPL KRETFWN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A3e-4721087112LOB family transfactor Ramosa2.1
5ly0_B3e-4721087112LOB family transfactor Ramosa2.1
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed predominantly in roots, and at low levels in shoots, floral stems and open flowers. {ECO:0000269|PubMed:12068116}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr3g031660.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU6515810.0CU651581.9 M.truncatula DNA sequence from clone MTH2-66L10 on chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003599327.11e-130LOB domain-containing protein 12
SwissprotQ8LBW39e-74LBD12_ARATH; LOB domain-containing protein 12
TrEMBLG7J0R01e-129G7J0R0_MEDTR; Lateral organ boundaries (LOB) domain protein
STRINGAES695781e-129(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16643497
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30130.11e-62LBD family protein
Publications ? help Back to Top
  1. Penfield S, et al.
    Reserve mobilization in the Arabidopsis endosperm fuels hypocotyl elongation in the dark, is independent of abscisic acid, and requires PHOSPHOENOLPYRUVATE CARBOXYKINASE1.
    Plant Cell, 2004. 16(10): p. 2705-18
    [PMID:15367715]
  2. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]