PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr3g014350.1
Common NameMTR_3g014350
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family M-type_MADS
Protein Properties Length: 51aa    MW: 5590.64 Da    PI: 4.5978
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr3g014350.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF351.8e-1120431740
                     HHHHHHHHHHHHHHHT-EEEEEEE CS
           SRF-TF 17 rngilKKAeELSvLCdaevaviif 40
                     rng+lKKA+ LS LCdaev++i+f
  Medtr3g014350.1 20 RNGLLKKANDLSFLCDAEVSIILF 43
                     89********************87 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PRINTSPR004045.9E-61833IPR002100Transcription factor, MADS-box
SuperFamilySSF554557.19E-92043IPR002100Transcription factor, MADS-box
PROSITE profilePS5006611.5492043IPR002100Transcription factor, MADS-box
PfamPF003192.1E-92043IPR002100Transcription factor, MADS-box
PRINTSPR004045.9E-63350IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 51 aa     Download sequence    Send to blast
MDNICFPFQS MTSDILKGIR NGLLKKANDL SFLCDAEVSI ILFLFCSTCI *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCR9564028e-61CR956402.15 M.truncatula DNA sequence from clone MTH2-50J5 on chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003598491.17e-29SRF-type transcription factor (DNA-binding and dimerization domain) protein
TrEMBLG7J0I18e-29G7J0I1_MEDTR; SRF-type transcription factor (DNA-binding and dimerization domain) protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02310.12e-08MIKC_MADS family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]