PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr2g438180.1
Common NameMTR_2g438180
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family ERF
Protein Properties Length: 134aa    MW: 15102.5 Da    PI: 5.0438
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr2g438180.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.92.2e-171363255
              AP2  2 gykGVrwdkkrgrWvAeIrdpse.ngkrkrfslgkfgtaeeAakaaiaarkkleg 55
                     +y+GVr+++ +g++ AeIrdp++      r +lg+f+taeeAa+a++  + +l+g
  Medtr2g438180.1 13 RYRGVRRRP-WGKYGAEIRDPTKpT---GRQWLGTFDTAEEAARAYDCEAIRLRG 63
                     6********.**********97744...688********************9998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103223.2881371IPR001471AP2/ERF domain
SuperFamilySSF541716.02E-221373IPR016177DNA-binding domain
CDDcd000188.25E-291372No hitNo description
SMARTSM003803.8E-281377IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.1E-291373IPR001471AP2/ERF domain
PfamPF008474.8E-101363IPR001471AP2/ERF domain
PRINTSPR003676.2E-111425IPR001471AP2/ERF domain
PRINTSPR003676.2E-113753IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 134 aa     Download sequence    Send to blast
MEDTNKKGEE EVRYRGVRRR PWGKYGAEIR DPTKPTGRQW LGTFDTAEEA ARAYDCEAIR  60
LRGALAILNF PDEYFFHLSS LSSASSSSPS TNDNANASSS STQHKDVIEF EYLDNKVLED  120
LLGSSKEYNE RKQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A9e-3081179114Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr2g438180.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013463356.11e-95ethylene-responsive transcription factor ERF098
SwissprotQ9LTC51e-36ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBLA0A072V5V23e-94A0A072V5V2_MEDTR; Ethylene response factor
STRINGXP_004487930.15e-61(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27033215
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23230.14e-29ERF family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]
  2. Van den Broeck L, et al.
    From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress.
    Mol. Syst. Biol., 2017. 13(12): p. 961
    [PMID:29269383]