PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr2g094730.1
Common NameMTR_2g094730
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family LBD
Protein Properties Length: 166aa    MW: 18887.1 Da    PI: 6.0852
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr2g094730.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26053.75.9e-172100199
           DUF260   1 aCaaCkvlrrkCa.kdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeee.redamsslvyeAearardPvyGavgvilklqqqleqlka 92 
                      +C+  ++   +C+ ++C++ pyf +++  +++n+h +FG +n+ ++  ++++++ r+++++sl++eA+ ++  P  G++gv ++ +  +++l++
  Medtr2g094730.1   2 PCSCFRIRSVRCEgQNCPYYPYFQNDE--EYRNIHTVFGYRNIRRVFFSTDNHDrRQELVDSLAWEARNKMLYPFTGSYGVQRETEALVATLQN 93 
                      6888899999**8467******98776..9********************9998789************************9999988888888 PP

           DUF260  93 elallke 99 
                      ++a+l++
  Medtr2g094730.1  94 QIATLEA 100
                      8887765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089111.8461102IPR004883Lateral organ boundaries, LOB
PfamPF031958.5E-15299IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 166 aa     Download sequence    Send to blast
MPCSCFRIRS VRCEGQNCPY YPYFQNDEEY RNIHTVFGYR NIRRVFFSTD NHDRRQELVD  60
SLAWEARNKM LYPFTGSYGV QRETEALVAT LQNQIATLEA DLANAQNSGA ANLNLNLNLN  120
LNPHQMPQIP NPNPPQVPQM HNFLGLPNVN ADVNDVVNQN PPQVP*
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr2g094730.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013465304.11e-119LOB domain-containing protein 30
TrEMBLA0A072VBF71e-118A0A072VBF7_MEDTR; DUF260 family protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G16530.18e-11ASYMMETRIC LEAVES 2-like 9
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]