PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr2g093060.3
Common NameMTR_2g093060
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family AP2
Protein Properties Length: 468aa    MW: 51701.8 Da    PI: 8.1212
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr2g093060.3genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.33.3e-17133182155
              AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                      s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  Medtr2g093060.3 133 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 182
                      78*******************......55************************998 PP

2AP241.92.5e-13225275155
              AP2   1 sgykGVrwdkkrgrWvAeIrdpseng...krkrfslgkfgtaeeAakaaiaarkkleg 55 
                      s+y+GV+ +k  grW+A+       g    +k+++lg f+++ eAa+a+++a++k +g
  Medtr2g093060.3 225 SKYRGVTLHK-CGRWEAR---M---GqllGKKYIYLGLFDSEVEAARAYDKAALKCNG 275
                      89********.7******...5...334336**********99**********99876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.1E-9133182IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-16133190IPR016177DNA-binding domain
PROSITE profilePS5103217.82134190IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.2E-17134190IPR001471AP2/ERF domain
CDDcd000182.81E-11134189No hitNo description
SMARTSM003803.0E-31134196IPR001471AP2/ERF domain
PfamPF008476.9E-9225275IPR001471AP2/ERF domain
CDDcd000181.11E-26225285No hitNo description
SuperFamilySSF541717.85E-17225284IPR016177DNA-binding domain
PROSITE profilePS5103215.725226283IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.6E-16226283IPR001471AP2/ERF domain
SMARTSM003801.3E-32226289IPR001471AP2/ERF domain
PRINTSPR003674.9E-6227238IPR001471AP2/ERF domain
PRINTSPR003674.9E-6265285IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 468 aa     Download sequence    Send to blast
MLDLNLNEDY EDSIMLVEKL PEASSGTSNS SIVNAEASSN ITGDEDSCST RAGGVFTFNF  60
GILKVEGGND DVVVPTKEFF PVSAGTSTMM IPARKSAMDL TMDRRLGGEN GVVEVQQKPQ  120
AKKSRRGPRS RSSQYRGVTF YRRTGRWESH IWDCGKQVYL GGFDTAHAAA RAYDRAAIKF  180
RGLDADINFN LVEYEEDMNQ MKNLSKEEFV HILRRHSNGF SRGSSKYRGV TLHKCGRWEA  240
RMGQLLGKKY IYLGLFDSEV EAARAYDKAA LKCNGREAVT NFEPSTYENE MKPGAINEGG  300
SHNLDLNLGM ATPGHEPKEN KGYCQFQTVP SYNMHPGRNL KMETNVNSVI GDPSLKKLVV  360
TEQRPPMWNA TFSSFFPNQE RAERIGIDPS KGHPNWGWQG HNQGTVSPVP QFSSAASSGF  420
SISATFPPNA IFQTQPINSI PQSLCFTPGS NASSQYYYQV KSSQAPP*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.26660.0glandular trichome| root| stem
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor (By similarity). Involved in spikelet transition. Regulator of starch biosynthesis especially during seed development (e.g. endosperm starch granules); represses the expression of type I starch synthesis genes. Prevents lemma and palea elongation as well as grain growth (By similarity). {ECO:0000250|UniProtKB:P47927, ECO:0000250|UniProtKB:Q2TQ34}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr2g093060.3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1414020.0BT141402.1 Medicago truncatula clone JCVI-FLMt-20N11 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013465270.10.0AP2-like ethylene-responsive transcription factor TOE3 isoform X2
SwissprotB8AXC31e-105AP21_ORYSI; APETALA2-like protein 1
TrEMBLA0A072VME80.0A0A072VME8_MEDTR; AP2-like ethylene-responsive transcription factor
STRINGAES673880.0(Medicago truncatula)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.31e-117related to AP2.7
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]