PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr2g087740.1
Common NameMTR_2g087740
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family YABBY
Protein Properties Length: 196aa    MW: 21670.6 Da    PI: 9.1808
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr2g087740.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY230.73.6e-7161702170
            YABBY   2 dvfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnveke.esast 94 
                      +++ + e+vCyv+CnfCnt lavsvP +sl+++vtvrCGhC++llsvn+  +s +  + ++ d+  k++l +    ++e+ ++ v+ + +s+s+
  Medtr2g087740.1   6 NMMATNERVCYVHCNFCNTTLAVSVPCSSLLTIVTVRCGHCANLLSVNMGATSLQSFTPQQ-DHPQKQQLIN---CHQEASRKEVVGSsSSSSS 95 
                      678899******************************************9988855444433.3343333333...2222222222222022222 PP

            YABBY  95 svsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170
                      s s+ k  +   +e pr+pp irPPekrqrvPsaynrfikeeiqrikasnPdishreafs+aaknWahfP+ihfgl
  Medtr2g087740.1  96 SSSKCKAFQPLVHEQPRTPP-IRPPEKRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFPHIHFGL 170
                      22222334566788899888.9****************************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046906.5E-7310170IPR006780YABBY protein
SuperFamilySSF470959.56E-9108163IPR009071High mobility group box domain
Gene3DG3DSA:1.10.30.104.0E-5118164IPR009071High mobility group box domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007275Biological Processmulticellular organism development
GO:0010158Biological Processabaxial cell fate specification
Sequence ? help Back to Top
Protein Sequence    Length: 196 aa     Download sequence    Send to blast
MSMDMNMMAT NERVCYVHCN FCNTTLAVSV PCSSLLTIVT VRCGHCANLL SVNMGATSLQ  60
SFTPQQDHPQ KQQLINCHQE ASRKEVVGSS SSSSSSSSKC KAFQPLVHEQ PRTPPIRPPE  120
KRQRVPSAYN RFIKEEIQRI KASNPDISHR EAFSTAAKNW AHFPHIHFGL KLDGSKQAKL  180
DHGVGEATQK SNGFY*
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed in subepidermal cells of anlagen regions, then in abaxial part of primordia and finally in differentiating organs. Levels decrease in differentiated organs. In embryo, expressed from the heart stage in the abaxial domain of the cotyledon primordia and decrease as the embryo matures. In stamen, expression restricted to the abaxial region differentiating into the connective. In gynoecium, expressed in the abaxial cell layers differentiating into the valves. {ECO:0000269|PubMed:10457020}.
UniprotTISSUE SPECIFICITY: Expressed at low levels in abaxial regions of lateral aerial organ primordia leading to cotyledons, leaves, flower meristems, sepals, petals, stamen and carpels, but not in roots. {ECO:0000269|PubMed:10457020}.
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the abaxial cell fate determination during embryogenesis and organogenesis. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr2g087740.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1360960.0BT136096.1 Medicago truncatula clone JCVI-FLMt-10K9 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003596925.11e-146putative axial regulator YABBY 2 isoform X1
RefseqXP_024632027.11e-146putative axial regulator YABBY 2 isoform X1
SwissprotQ9XFB04e-76YAB2_ARATH; Putative axial regulator YABBY 2
TrEMBLG7IRH41e-145G7IRH4_MEDTR; Plant-specific transcription factor YABBY family protein
STRINGAES671761e-145(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF112434112
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08465.14e-75YABBY family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]
  2. Sacharowski SP, et al.
    SWP73 Subunits of Arabidopsis SWI/SNF Chromatin Remodeling Complexes Play Distinct Roles in Leaf and Flower Development.
    Plant Cell, 2015. 27(7): p. 1889-906
    [PMID:26106148]