PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr2g030740.1
Common NameMTR_2g030740
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family M-type_MADS
Protein Properties Length: 238aa    MW: 26626.4 Da    PI: 10.0396
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr2g030740.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF74.67.9e-241664149
                     S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
           SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                     k+i n+sn qvtfskRr g++KKA+EL++LC+a+va+++fs++ k++ +
  Medtr2g030740.1 16 KKITNESNLQVTFSKRRSGLFKKASELCTLCGADVALVVFSPREKVFSF 64
                     689******************************************9987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006625.441868IPR002100Transcription factor, MADS-box
SMARTSM004321.5E-34867IPR002100Transcription factor, MADS-box
CDDcd002652.15E-37977No hitNo description
SuperFamilySSF554552.62E-29983IPR002100Transcription factor, MADS-box
PRINTSPR004041.0E-201030IPR002100Transcription factor, MADS-box
PfamPF003191.1E-251764IPR002100Transcription factor, MADS-box
PRINTSPR004041.0E-203045IPR002100Transcription factor, MADS-box
PRINTSPR004041.0E-204566IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
MSSGRKSQGR QKIEMKKITN ESNLQVTFSK RRSGLFKKAS ELCTLCGADV ALVVFSPREK  60
VFSFGHPNVD TVIDRYLSRV PPQNNGTMQF IEAHRSASVC ELNIQVTQIN QLLDIEKKRA  120
EELSNLHKAT ETQFWWAGPV DGMNRAQLEL FKKALDELKK LVAHHVDRLV IQGAPTQTLP  180
YFAGNSSSSN MPLHHQPNPP QAHMFPAQFY QNPMLQPHLF GFNNMGGGGG YGPSRFF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3p57_J5e-16987179Myocyte-specific enhancer factor 2A
3p57_I5e-16987179Myocyte-specific enhancer factor 2A
3p57_D5e-16987179Myocyte-specific enhancer factor 2A
3p57_C5e-16987179Myocyte-specific enhancer factor 2A
3p57_B5e-16987179Myocyte-specific enhancer factor 2A
3p57_A5e-16987179Myocyte-specific enhancer factor 2A
3kov_J5e-16987179Myocyte-specific enhancer factor 2A
3kov_I5e-16987179Myocyte-specific enhancer factor 2A
3kov_B5e-16987179Myocyte-specific enhancer factor 2A
3kov_A5e-16987179Myocyte-specific enhancer factor 2A
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1470100.0AC147010.32 Medicago truncatula clone mth2-145p5, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003594574.11e-180MADS-box transcription factor family protein
SwissprotQ9FKK21e-58AGL62_ARATH; Agamous-like MADS-box protein AGL62
TrEMBLG7IMI91e-180G7IMI9_MEDTR; MADS-box transcription factor family protein
STRINGGLYMA10G40080.19e-94(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF12833331
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.14e-60AGAMOUS-like 62
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]