PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr2g027860.2
Common NameMTR_2g027860
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family G2-like
Protein Properties Length: 331aa    MW: 36109.4 Da    PI: 6.7093
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr2g027860.2genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like107.85.8e-3449103155
          G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                      k+rlrWt+eLHerFv+av+qLGG+++AtPk +l++m+v+gLt++hvkSHLQkYRl
  Medtr2g027860.2  49 KQRLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRL 103
                      79****************************************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.81346106IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.8E-3248104IPR009057Homeodomain-like
SuperFamilySSF466899.32E-1848103IPR009057Homeodomain-like
TIGRFAMsTIGR015571.3E-2549104IPR006447Myb domain, plants
PfamPF002491.3E-951102IPR001005SANT/Myb domain
PfamPF143791.8E-23136182IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MYHPTNVPDS SLVGSNPLVH GQHIDSGRSA MDPGSGGNSL ANNSNLNSKQ RLRWTHELHE  60
RFVDAVAQLG GPDRATPKGV LRVMGVQGLT IYHVKSHLQK YRLAKYLPDC SSDEGKKTDK  120
KETGDMLSNL DGSSGMQITE ALKLQMEVQK RLHEQLEVQR QLQLRIEAQG KYLKKIIEEQ  180
QRLSGVLSEA PGSGVSAPTP GDMFQQELDN KTEPATPDPE KAAKEHAPAK SLSAESFSSH  240
HEPMTPDSGC QVGSPADSPN GERSTKKQRV SVEGAYLKSD MVLPHQILES SMPSYQQPNA  300
IFLTQDHFDP SLGLSTRSGE ELDKLGGRNM *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A2e-2349106259Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B2e-2349106259Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A2e-2349106158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B2e-2349106158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C2e-2349106158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D2e-2349106158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A2e-2349106259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C2e-2349106259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D2e-2349106259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F2e-2349106259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H2e-2349106259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J2e-2349106259Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.109930.0flower| leaf| pod| root| stem
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00252DAPTransfer from AT2G01060Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr2g027860.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1436180.0BT143618.1 Medicago truncatula clone JCVI-FLMt-6M11 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003594371.10.0myb family transcription factor PHL7
RefseqXP_024631417.10.0myb family transcription factor PHL7
SwissprotQ9SJW01e-118PHL7_ARATH; Myb family transcription factor PHL7
TrEMBLG7ISP00.0G7ISP0_MEDTR; Myb-like transcription factor family protein
STRINGAES646220.0(Medicago truncatula)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01060.15e-98G2-like family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]