PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr2g027800.4
Common NameMTR_2g027800
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family G2-like
Protein Properties Length: 300aa    MW: 32903.6 Da    PI: 7.1098
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr2g027800.4genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like106.91.1e-333993155
          G2-like  1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                     kprlrWt++LHerFv+av+qLGG+ kAtPk+i+++m+vkgLtl h+kSHLQkYRl
  Medtr2g027800.4 39 KPRLRWTQDLHERFVDAVTQLGGPSKATPKAIMRTMNVKGLTLFHLKSHLQKYRL 93
                     79****************************************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.606.8E-323693IPR009057Homeodomain-like
TIGRFAMsTIGR015574.1E-243993IPR006447Myb domain, plants
SuperFamilySSF466899.68E-173995IPR009057Homeodomain-like
PfamPF002491.1E-74192IPR001005SANT/Myb domain
PfamPF143792.0E-15123168IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010628Biological Processpositive regulation of gene expression
GO:0016036Biological Processcellular response to phosphate starvation
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MFPRLIHPHD GIVVGQDDLQ GGVSNHKGDP CLVLTADPKP RLRWTQDLHE RFVDAVTQLG  60
GPSKATPKAI MRTMNVKGLT LFHLKSHLQK YRLGMTGSYL LESPGTENPS PKLPTSDTNE  120
GYEIKEALRA QMEVQSKLHL QVEAEKHLQI RQDAERRYMA MLERACKMLA DQFIGATVID  180
TDSQKFQGIE NKAPRGPLVD HLGFYSLPST EAAGVNVPEE EVPQTIPPQR ADCSTESCLT  240
SHESSGGLTL EGSQVGGKRR MLGMDSMAAP LIWSEAKMKT QAINLGQGNH PLGISRYGM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A4e-183992154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B4e-183992154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C4e-183992154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D4e-183992154Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.114600.0root| seed| stem
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator (PubMed:26586833). Acts redundantly with PHR1 as a key component of the central regulatory system controlling transcriptional responses to Pi starvation (PubMed:26586833). Binds in a sequence-specific manner to phosphate starvation-regulated promoters (PubMed:26586833). {ECO:0000269|PubMed:26586833}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00378DAPTransfer from AT3G24120Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr2g027800.4
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in roots by low Pi. {ECO:0000269|PubMed:26586833}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1397930.0BT139793.1 Medicago truncatula clone JCVI-FLMt-13F21 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003594368.10.0protein PHR1-LIKE 2 isoform X2
SwissprotQ94A575e-57PHL2_ARATH; Protein PHR1-LIKE 2
TrEMBLG7ISN70.0G7ISN7_MEDTR; Myb-like transcription factor family protein
STRINGAES646180.0(Medicago truncatula)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24120.12e-59G2-like family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]