PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr2g023340.1
Common NameMTR_2g023340, NF-YC10
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family NF-YC
Protein Properties Length: 245aa    MW: 27698.5 Da    PI: 7.7602
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr2g023340.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC144.23e-45641652100
            NF-YC   2 lksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdfl 92 
                      l +fw+kq   +ek+ df+n+ lPlarikki+ka+e v+misaeaP+l++kace+fi+el+ rsw +ae nkr+tl+ksdia+av++ ++fdfl
  Medtr2g023340.1  64 LGTFWAKQneeVEKVVDFRNNGLPLARIKKIMKAEEGVSMISAEAPILFAKACEMFIMELATRSWANAEVNKRKTLQKSDIASAVSSNEVFDFL 157
                      678**9998889999******************************************************************************* PP

            NF-YC  93 vdivprde 100
                      vdivpr++
  Medtr2g023340.1 158 VDIVPREN 165
                      ******96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471136.74E-2855157IPR009072Histone-fold
Gene3DG3DSA:1.10.20.106.1E-3486163IPR009072Histone-fold
PfamPF008082.4E-2086148IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MDQKTQVKPE ERRNDTQTQN QIVSVSRPLF HTANASAFSS YMSRVQVQEI SHQQQKQQEL  60
QKKLGTFWAK QNEEVEKVVD FRNNGLPLAR IKKIMKAEEG VSMISAEAPI LFAKACEMFI  120
MELATRSWAN AEVNKRKTLQ KSDIASAVSS NEVFDFLVDI VPRENTMERD IFMGIPRREN  180
VPYYLPMPVH VPPQYAAGPS YGPAGMLMGR HLPNQPPSHP FANQIFPTPK KESDHSTDLP  240
NSDD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g92_C2e-34541639119HapE
4g91_C2e-34541639119HapE
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJQ9183020.0JQ918302.1 Medicago truncatula nuclear transcription factor Y subunit C10 (NF-YC10) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013462829.10.0core histone H2A/H2B/H3/H4
SwissprotQ9SMP01e-51NFYC1_ARATH; Nuclear transcription factor Y subunit C-1
TrEMBLI3TAY70.0I3TAY7_MEDTR; Core histone H2A/H2B/H3/H4
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF125734108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48590.16e-53nuclear factor Y, subunit C1
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]