PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr2g019750.1
Common NameMTR_2g019750
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family ERF
Protein Properties Length: 297aa    MW: 33328.1 Da    PI: 5.4956
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr2g019750.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP252.31.4e-164998255
              AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                     ++ GVr+++ +gr++AeIrdp +   + r++lg+f+ta+eAa a+++a+++++g
  Medtr2g019750.1 49 KFLGVRRRP-WGRYAAEIRDPAT---KERHWLGTFDTAQEAAFAYDRAALSIKG 98
                     678******.**********843...4***********************9987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.3E-2749105IPR001471AP2/ERF domain
PROSITE profilePS5103220.63949106IPR001471AP2/ERF domain
CDDcd000184.31E-2949105No hitNo description
SuperFamilySSF541716.54E-2049106IPR016177DNA-binding domain
SMARTSM003801.3E-3249112IPR001471AP2/ERF domain
PRINTSPR003671.8E-75061IPR001471AP2/ERF domain
PfamPF008471.8E-95198IPR001471AP2/ERF domain
PRINTSPR003671.8E-77288IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MSTSRTSNTS LKGHDHHHNQ IQINLSLLQR NTSVCGEKRG RKKQAEPGKF LGVRRRPWGR  60
YAAEIRDPAT KERHWLGTFD TAQEAAFAYD RAALSIKGSN ARTNFIYPSS SSDEDDTNFH  120
NVVDPPFDVQ RTQPITNQNT LSQLDSNSHL NNDNLLFSND YNNSGYLESI VPVNCFKPIS  180
NTNNSNFDDH SSNASDSSEH QNVVDSICTT NFMHGQSFFD YTPFSQEAYN INTSNYSEGL  240
WDCNYNELSA IFNQPPRSEI PSYGLMTTQD VSSTTYSSHS YSPFGDVDMG MGYSLF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A6e-2040105571Ethylene-responsive transcription factor ERF096
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr2g019750.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1862950.0AC186295.3 Medicago truncatula chromosome 2 BAC clone mth2-26g6, complete sequence.
GenBankAC2053910.0AC205391.2 Medicago truncatula chromosome 2 BAC clone mth2-38p15, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003593957.10.0ethylene-responsive transcription factor LEP
TrEMBLG7IPZ00.0G7IPZ0_MEDTR; AP2 domain class transcription factor
STRINGAES642080.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF57843351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18560.13e-43ERF family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]