PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr2g016220.4
Common NameMTR_2g016220
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family G2-like
Protein Properties Length: 379aa    MW: 43927.8 Da    PI: 7.4356
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr2g016220.4genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like85.94e-2790147255
          G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ....kYRl 55 
                      prlrWtpeLH++F++ave+LGG e+AtPk +l+lm+v gL + hvkSHLQ    +YR+
  Medtr2g016220.4  90 PRLRWTPELHHSFLHAVERLGGLERATPKLVLQLMSVRGLNIGHVKSHLQfsfqMYRS 147
                      8************************************************633337775 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.0E-2586148IPR009057Homeodomain-like
SuperFamilySSF466892.33E-1288146IPR009057Homeodomain-like
TIGRFAMsTIGR015574.5E-1990143IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 379 aa     Download sequence    Send to blast
MSEEGHEIHN NYIQSEDLQL VEESDNSSGS SKKWSSFDLN EEATSEDNNH EATLEENENE  60
KENIEGNSRS REGNNERRGK VRHYVRSKMP RLRWTPELHH SFLHAVERLG GLERATPKLV  120
LQLMSVRGLN IGHVKSHLQF SFQMYRSKKL DEFGQVLCQT QRSTQEVGRS QKLDLSQHFK  180
MGNGGIILSS SYNEQHHNPQ YFPTLLKPCP SFSLSRNYSH TNSSHHDDSR HQHWHFNHQP  240
FKFAPVTPTQ FLEEKNWSPF EIMNNIHQPE FKRLLSNVTS KTWSKPIEKV EWNNTSSSIT  300
NNTEYLLKSK EPCTSSTSLL LQFEAPFRIK LNQEKVHKDE KRLLPDLQLG LSHIYGNNDG  360
KIDHCRETKE ISTKLSLS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A5e-1591139452Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B5e-1591139452Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A5e-1591139452Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C5e-1591139452Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D5e-1591139452Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F5e-1591139452Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H5e-1591139452Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J5e-1591139452Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr2g016220.4
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013462569.10.0transcription factor LUX isoform X1
RefseqXP_024631504.10.0transcription factor LUX isoform X1
TrEMBLA0A072VEK00.0A0A072VEK0_MEDTR; Myb-like DNA-binding domain, shaqkyf class protein
STRINGAES839410.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF30123270
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38300.13e-30G2-like family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]