PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr2g006150.1
Common NameMTR_2g006150
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family TCP
Protein Properties Length: 488aa    MW: 51820.4 Da    PI: 6.7754
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr2g006150.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP134.68.8e-421252843136
              TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg....... 88 
                      + k++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa+pai+++tgt++++a+++  ++s +ss+s+ s++       
  Medtr2g006150.1 125 PPKRSTKDRHTKVDGRGRRIRMPATCAARVFQLTRELGHKSDGETIEWLLQQAEPAIIAATGTGTIPANFStLNVSLRSSGSTLSAPpsksapl 218
                      5699****************************************************************99988889999988666667777788 PP

              TCP  89 ..................kaaksaa.kskksqksaasalnlakesr...akarar.arertrekmriknkl 136
                                        +    +a    + ++++++ ++l++  +   a ++++  r+r re+ ++++++
  Medtr2g006150.1 219 sfhsalalahhpyeeaayQ----HApLLGFHPHQHHQ-QQLMNADQigeALSNENyMRKRYREDLFKEDNN 284
                      8888777777777754331....22222222222221.222221112222222223444555555554444 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036343.1E-40129277IPR005333Transcription factor, TCP
PROSITE profilePS5136928.496130184IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001047Molecular Functioncore promoter binding
Sequence ? help Back to Top
Protein Sequence    Length: 488 aa     Download sequence    Send to blast
MELSDLQNNK QKRGTTNIHP HHQQQESSSP SNSHHQQLVV PFDGRPSPFI MGSISNIQPS  60
SNSSPSNSSS SSASASASAS APTQHLIDAS LAIATRSEPP LPDVSNNQIQ PFSSTSTTVT  120
AVANPPKRST KDRHTKVDGR GRRIRMPATC AARVFQLTRE LGHKSDGETI EWLLQQAEPA  180
IIAATGTGTI PANFSTLNVS LRSSGSTLSA PPSKSAPLSF HSALALAHHP YEEAAYQHAP  240
LLGFHPHQHH QQQLMNADQI GEALSNENYM RKRYREDLFK EDNNNQNESG GDGDGSSSPK  300
SFKTNHQQQD DMGEGDGGGG GASSSSSIGN SFSGLLRPSN MLPATAMWAT AGSGSTIWMV  360
PVSGGAATSN SETQTQNMWP FNPHVQSQNQ GNAAVTPSQL HFMPRFNVPA SGGVEFQGGR  420
GGLQLGSAYQ PSQHLGLAVS DSNMGMFAAL NAYNRAAHFN VNNSSDHHQQ QPQPNDESGE  480
DAPNTSQ*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.105670.0root
Mtr.213190.0pod| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr2g006150.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1343220.0AC134322.25 Medicago truncatula clone mth2-17i21, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003592963.10.0transcription factor TCP8 isoform X1
TrEMBLG7INN60.0G7INN6_MEDTR; TCP family transcription factor
STRINGAES632140.0(Medicago truncatula)
STRINGAES632530.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF60773050
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G58100.15e-68TCP family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]