PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr1g114380.1
Common NameMTR_1g114380
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family TCP
Protein Properties Length: 258aa    MW: 27430.6 Da    PI: 10.1468
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr1g114380.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP119.15.5e-3727185289
              TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec....eaesssssasnsssg... 88 
                      a+kk + +++h+kv+gR+RR+R+++ caar+F+L++eLG+++d++tieWLl+qa+p+i+++tgt++++as++    +       +s++s +   
  Medtr1g114380.1  27 AVKKPPAKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPASFSslsvS-----LRGSSNSLPsps 115
                      789*************************************************************9999977743221.....222222222333 PP

              TCP  89 .....................................................................k 89 
                                                                                           +
  Medtr1g114380.1 116 stsldhkpllsptpfilgkrirtdddsssssakddalsvgslstpaalwalparpdfgqiwsfaaaaagA 185
                      4456666666666666666665555555555555555555555556666666666666666555555551 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136927.8923387IPR017887Transcription factor TCP subgroup
PfamPF036349.1E-3433196IPR005333Transcription factor, TCP
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
MSNPDGTTTT TTTTNGSIID PNRQQLAVKK PPAKDRHSKV DGRGRRIRMP IICAARVFQL  60
TRELGHKSDG QTIEWLLRQA EPSIIAATGT GTTPASFSSL SVSLRGSSNS LPSPSSTSLD  120
HKPLLSPTPF ILGKRIRTDD DSSSSSAKDD ALSVGSLSTP AALWALPARP DFGQIWSFAA  180
AAAGAPPPEM MVQSLSQQQH QVQANFFAHH HQQQQHQQAM GEASAARVGN YLPGHLNLLA  240
SLSGGHGNSG RRDDEHH*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.101770.0flower| root| stem
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00524DAPTransfer from AT5G23280Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr1g114380.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1518240.0AC151824.13 Medicago truncatula clone mth2-45n18, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003592726.10.0transcription factor TCP7
SwissprotQ9FMX21e-96TCP7_ARATH; Transcription factor TCP7
TrEMBLG7IE920.0G7IE92_MEDTR; Putative transcription factor TCP family
STRINGAES629770.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF54693153
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23280.15e-62TCP family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]