PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr1g106420.1
Common NameMTR_1g106420
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family LBD
Protein Properties Length: 195aa    MW: 21638.4 Da    PI: 8.0034
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr1g106420.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26095.27.2e-302102196
           DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleq 89 
                      +C++C+vlr++C++dC+l+ ++     p++q++++ +v k+FG+++++++l+ +++++r+++++sl+yeA  r+ +Pv+Gavg+++++++q +q
  Medtr1g106420.1   2 SCNGCRVLRKGCSEDCMLRDCLtwiqnPQAQANATVFVTKFFGRATLMSFLSPVHPNQRSCLFQSLMYEAVGRTINPVNGAVGLLWTGKWQFCQ 95 
                      6********************************************************************************************* PP

           DUF260  90 lkaelal 96 
                      l +e +l
  Medtr1g106420.1  96 LGVEQVL 102
                      9988766 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089117.2851107IPR004883Lateral organ boundaries, LOB
PfamPF031951.1E-25299IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 195 aa     Download sequence    Send to blast
MSCNGCRVLR KGCSEDCMLR DCLTWIQNPQ AQANATVFVT KFFGRATLMS FLSPVHPNQR  60
SCLFQSLMYE AVGRTINPVN GAVGLLWTGK WQFCQLGVEQ VLRGNGGALT ALPDQLLGVD  120
HDSSSIHHQY HQQQSGLMSY SRVVKNQAEK QRAGTHESEE SESSTLGSRT RTEDCSYVYA  180
NSQTQRNQLL TLFL*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.131920.0root
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269|PubMed:12068116}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr1g106420.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1372750.0BT137275.1 Medicago truncatula clone JCVI-FLMt-4B8 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003592478.11e-145LOB domain-containing protein 38
SwissprotQ9SN231e-52LBD38_ARATH; LOB domain-containing protein 38
TrEMBLG7IE591e-143G7IE59_MEDTR; LOB domain protein
STRINGAES627291e-144(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF72134136
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49940.13e-54LOB domain-containing protein 38
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]