PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr1g094045.1
Common NameMTR_1g094045
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family Trihelix
Protein Properties Length: 382aa    MW: 42978.7 Da    PI: 9.3689
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr1g094045.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix45.91.5e-1456162272
         trihelix   2 WtkqevlaLiearr.emeerlrrgk...................................lkkplWeevskkmrergferspkqCkekwenlnk 59 
                      Wt qe+l Li+a++ ++e+rlr+++                                   + + +W++v ++++++g+ rs++qC++kw+nl +
  Medtr1g094045.1  56 WTIQETLILITAKKlDDERRLRNTStststpssssqdpnrtpntthvtsiaspststsrsSGELRWKWVENYCWSHGCLRSQNQCNDKWDNLLR 149
                      *************9534444444335677788888889999999999999999999999899******************************** PP

         trihelix  60 rykkikegekkrt 72 
                      +ykk+++ e+k +
  Medtr1g094045.1 150 DYKKVRDYESKSE 162
                      *********9953 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.4E-55267IPR009057Homeodomain-like
PfamPF138372.3E-955165No hitNo description
Gene3DG3DSA:1.10.10.604.4E-5113149IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 382 aa     Download sequence    Send to blast
MSDPSTSTTP LPHPSILTDQ HNLPLIHSIT TAQPPPPQPQ PPSSSSSSRE YRKGNWTIQE  60
TLILITAKKL DDERRLRNTS TSTSTPSSSS QDPNRTPNTT HVTSIASPST STSRSSGELR  120
WKWVENYCWS HGCLRSQNQC NDKWDNLLRD YKKVRDYESK SESSPPNNNS NKDHFPSYWI  180
LNKQQRKEQN LPSNMVFEVY QAISEVLQRK QSQRNNPTPL QQHQQQGLVT LASSPLPALP  240
LQTQFLPPPP PPPLPPPLPL QQPPPPPHAP AVSERTESSD SEKSEDNDED DGGSESKRRK  300
VKNLGSSIMR SASVLARALR RCEEKKEKRH RELIELEQRR IQMEESRNEV HRQGIATLVA  360
AVSNLSGAIH SFINSEHHGQ R*
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr1g094045.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013469425.10.0trihelix transcription factor ASR3
TrEMBLA0A072VPY80.0A0A072VPY8_MEDTR; Myb/SANT-like DNA-binding domain protein
STRINGXP_004496217.11e-164(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF68043242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35640.12e-40Trihelix family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]