PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr1g093080.3
Common NameMTR_1g093080
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family G2-like
Protein Properties Length: 254aa    MW: 28971.5 Da    PI: 7.4332
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr1g093080.3genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like33.31.1e-10211235125
          G2-like   1 kprlrWtpeLHerFveaveqLGGse 25 
                      k+r++W++eLH+rF++a++qLGG++
  Medtr1g093080.3 211 KQRRCWSQELHKRFLKALQQLGGAD 235
                      79*********************87 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.4E-8209236IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009737Biological Processresponse to abscisic acid
GO:0055062Biological Processphosphate ion homeostasis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MQRFKMGFSD YIQALEQERR KIQVFPKELP LSLELVTQAI EACRQQLSGT TTEYNLNGQS  60
ECSEQTTSTD GPVLEEFIPI KKRASSYSQE VFDDVEDYDQ HFHHKQQKLS LDNKKKSDWL  120
RSVQLWNSDP SSEEDVTKKA VPVLELKRNG CGGGAFHPFH KEDRVNNTTS ELLSKGQPSS  180
TGVAAVSSNA ATVTSNNVEN RKRDEKEEKR KQRRCWSQEL HKRFLKALQQ LGGADCEYLN  240
IYIKVLIIMY SCC*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.24980.0glandular trichome| root| stem
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00218DAPTransfer from AT1G68670Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr1g093080.3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1400270.0AC140027.11 Medicago truncatula clone mth2-5m21, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003591795.21e-177transcription factor HHO2
TrEMBLA0A072VN790.0A0A072VN79_MEDTR; Myb-like transcription factor family protein
STRINGAES620461e-116(Medicago truncatula)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25550.13e-42G2-like family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]