PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr1g090703.1
Common NameMTR_1g090703
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family C2H2
Protein Properties Length: 356aa    MW: 39369.4 Da    PI: 7.1257
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr1g090703.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.60.00085156178123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      y+C+ C+++F++   L  H  +H
  Medtr1g090703.1 156 YECKTCNRTFPSFQALGGHRASH 178
                      99**********99999998887 PP

2zf-C2H2130.00032234256123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      ++C++Cg  F++   L  H+r+H
  Medtr1g090703.1 234 HECSICGSEFTSGQALGGHMRRH 256
                      78********************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139123.3E-13155180IPR007087Zinc finger, C2H2
SuperFamilySSF576671.03E-8155178No hitNo description
SMARTSM003550.052156178IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.637156183IPR007087Zinc finger, C2H2
PROSITE patternPS000280158178IPR007087Zinc finger, C2H2
SuperFamilySSF576671.03E-8229256No hitNo description
PfamPF139128.6E-12233258IPR007087Zinc finger, C2H2
SMARTSM003550.019234256IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.743234256IPR007087Zinc finger, C2H2
PROSITE patternPS000280236256IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    Send to blast
MEPAPEQPEQ QISLASREIT NIIKGKRTKR VRPQSPIPFS ITANSSTGEG GGGGGEREDC  60
NNVDDVNNNT IINTNNNNTS PTTSYVEEKQ DSTVVIDEEY DMANCLILLA QGQAKESSTK  120
NTDDLDGGMM NYTKYSSRKF MEAATLDSGR AGFYVYECKT CNRTFPSFQA LGGHRASHKK  180
PKALAIAQEK KHLYDDDQEF QFKPNHKSIS LQLNNNGKGN LHGGSNNNNK SKVHECSICG  240
SEFTSGQALG GHMRRHRAPV GTSAANTTLS LTTMALEPDE DHPRKKRNVL SLDLDLNLPA  300
PEDDHRESKF AFASKQHQQQ QQQNGQKQQQ QQQQQQQKQQ TNLVFSAPAL VDCHY*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00487DAPTransfer from AT5G04390Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr1g090703.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1458990.0BT145899.1 Medicago truncatula clone JCVI-FLMt-14I9 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013469274.10.0zinc finger protein ZAT5
TrEMBLA0A072VNA70.0A0A072VNA7_MEDTR; C2H2-type zinc finger protein
STRINGXP_007144239.11e-130(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF58634141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04390.19e-64C2H2 family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]