PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr1g089830.1
Common NameMTR_1g089830
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family GATA
Protein Properties Length: 146aa    MW: 16286.2 Da    PI: 4.6346
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr1g089830.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA36.56.8e-12432735
             GATA  7 tkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                     t+T+ WR+gp  ++ LCnaCGl+++ kg+
  Medtr1g089830.1  4 TETKVWRKGPYETPILCNACGLHFKAKGT 32
                     89********77777**********9997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501148.537131IPR000679Zinc finger, GATA-type
CDDcd002025.51E-11332No hitNo description
SMARTSM004012.0E-4344IPR000679Zinc finger, GATA-type
SuperFamilySSF577169.5E-8435No hitNo description
Gene3DG3DSA:3.30.50.103.2E-9432IPR013088Zinc finger, NHR/GATA-type
PfamPF003208.0E-10432IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 146 aa     Download sequence    Send to blast
MISTETKVWR KGPYETPILC NACGLHFKAK GTLENYLPKI AQQNMSLDLD IEKASQSDPK  60
LSNQTPETST PMEEFQQKLR DLWESEKEVN ESSSNNILLF DNMNNFIPSN EIGLGCSLLK  120
TDVTSTGCTL QKTNVTFTDQ HDSHA*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1741461e-34AC174146.17 Medicago truncatula chromosome 8 clone mth2-64g3, complete sequence.
GenBankAC1249541e-34AC124954.14 Medicago truncatula chromosome 8 clone mth2-10g9, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003591618.11e-105GATA zinc finger protein
TrEMBLG7I2W41e-105G7I2W4_MEDTR; GATA zinc finger protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF127471024
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17570.14e-10GATA transcription factor 26
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]