PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr1g082660.1
Common NameMTR_1g082660, NF-YC1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family NF-YC
Protein Properties Length: 257aa    MW: 28511.1 Da    PI: 5.9641
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr1g082660.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC174.88.6e-55791821101
            NF-YC   1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdf 91 
                      ql++fw +q   iek+tdfknh+lPlarikki+kadedvkmisaeaPv++++ace+fileltlrsw+h+eenkrrtl+k+diaaa+t tdifdf
  Medtr1g082660.1  79 QLQTFWGNQyqeIEKVTDFKNHSLPLARIKKIMKADEDVKMISAEAPVVFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITGTDIFDF 172
                      89****9999999********************************************************************************* PP

            NF-YC  92 lvdivprdel 101
                      lvdivpr++l
  Medtr1g082660.1 173 LVDIVPREDL 182
                      *******987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471137.88E-3369173IPR009072Histone-fold
Gene3DG3DSA:1.10.20.101.8E-3793165IPR009072Histone-fold
PfamPF008082.5E-21101164IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MDHQGHGQNP NMGVVGSGQM APYGSNPYQP NPMTGSPGMV VPSVGTIQPG GQPDGTQLGQ  60
HQLAYQHIHQ QQQQQQQQQL QTFWGNQYQE IEKVTDFKNH SLPLARIKKI MKADEDVKMI  120
SAEAPVVFAR ACEMFILELT LRSWNHTEEN KRRTLQKNDI AAAITGTDIF DFLVDIVPRE  180
DLKDEVLASI PRGPMPVGGP ADGIPYCYMP PQNAQQAGNP GLMMHNPNMY APQSHPYMAP  240
QMWPQPPEQQ QSPSDH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1n1j_B4e-4285179197NF-YC
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1151157RRTLQKN
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.54100.0glandular trichome| leaf| pod| root| seed
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJQ9182930.0JQ918293.1 Medicago truncatula nuclear transcription factor Y subunit C1 (NF-YC1) mRNA, complete cds.
GenBankAC1558970.0AC155897.35 Medicago truncatula clone mth2-41m18, complete sequence.
GenBankAC1365030.0AC136503.46 Medicago truncatula clone mth2-15n1, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003591084.10.0nuclear transcription factor Y protein
SwissprotQ8L4B25e-89NFYC9_ARATH; Nuclear transcription factor Y subunit C-9
TrEMBLB7FI760.0B7FI76_MEDTR; Nuclear transcription factor Y protein
STRINGGLYMA19G42460.11e-141(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF125734108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08970.41e-83nuclear factor Y, subunit C9
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]