PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr1g081560.1
Common NameMTR_1g081560
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family GeBP
Protein Properties Length: 376aa    MW: 42703.5 Da    PI: 4.3919
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr1g081560.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57380.42.7e-25131228297
           DUF573   2 lfqrlwseeDeivlLqGlidfkaktgk...spsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifels 92 
                      + qrlw+++Dei lL+G +d+ +++g      ++ +  fy++v  + s++++++qlveK+rrLK+K k+  +k  ++ ++sf+ +++q ife+s
  Medtr1g081560.1 131 QYQRLWTKQDEIELLKGYLDYIKQQGRantTIQSGVASFYDQVIPKFSVEFNRNQLVEKLRRLKRKHKMTLDK-GKEVQISFKIPQEQAIFEIS 223
                      68*******************999998653444599*************************************.778889************** PP

           DUF573  93 kkiWg 97 
                      +kiWg
  Medtr1g081560.1 224 HKIWG 228
                      ****8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045043.6E-24133228IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 376 aa     Download sequence    Send to blast
MLSPLVSWIL STSSSSSSSS EEEEEESLDI NNDDSDNEKF DNDNVEDQMD NVDDDEKDHF  60
LCPYNVDEDQ MDNIPIALAV SDASPVVTVA MAAPADDTNA ATNTATTSAT TTITTRSKRQ  120
YNKKYSDGVK QYQRLWTKQD EIELLKGYLD YIKQQGRANT TIQSGVASFY DQVIPKFSVE  180
FNRNQLVEKL RRLKRKHKMT LDKGKEVQIS FKIPQEQAIF EISHKIWGND TDHDVLDVDD  240
SRPVPESPDL IENIKLKAED VDNCEETDKR AHKRVRLTTD DVNSKNYQSN SDATSLRGFI  300
EETMKSCFSP LLKELLDDVP VEPPGALPML LSTGEVRDEK WLKRRILELE VYLNRLELLQ  360
GQIKARLEEL KSSLD*
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr1g081560.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003591030.20.0probable transcription factor At5g28040
TrEMBLG7I7E50.0G7I7E5_MEDTR; Putative transcription factor GeBP family
STRINGAES612810.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1630579
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28040.12e-40DNA-binding storekeeper protein-related transcriptional regulator
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]