PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr1g079630.1
Common NameMTR_1g079630
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family ERF
Protein Properties Length: 149aa    MW: 16675.8 Da    PI: 6.6841
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr1g079630.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP226.51.6e-082244124
              AP2  1 sgykGVrwdkkrgrWvAeIrdpse 24
                     + ykGVr++  +g+WvAeIr+p+ 
  Medtr1g079630.1 22 CNYKGVRQRT-WGKWVAEIREPKP 44
                     56*****999.**********965 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.77E-162266No hitNo description
SuperFamilySSF541716.08E-92364IPR016177DNA-binding domain
PROSITE profilePS5103210.73123107IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.3E-92343IPR001471AP2/ERF domain
SMARTSM003807.0E-132370IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 149 aa     Download sequence    Send to blast
MMKKESKKLR SRRKGGPENA LCNYKGVRQR TWGKWVAEIR EPKPLAYDNA SKRLYGESAR  60
LNLAPSQSST TTSIGIDPTQ STAPKCIEEN SNNNNNNKGV LVETNLDLEL QSLPWNTSDF  120
VMDDFMELND TLLAQGLKDW DPSSLLEI*
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr1g079630.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1465591e-177AC146559.29 Medicago truncatula clone mth2-12e5, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLG7I6591e-104G7I659_MEDTR; AP2 domain class transcription factor
STRINGAES611661e-105(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF117534106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40350.12e-20ERF family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]