PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr1g074310.1
Common NameMTR_1g074310
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family ERF
Protein Properties Length: 145aa    MW: 16378.4 Da    PI: 9.5872
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr1g074310.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP267.82e-212071256
              AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                     +++GVr+++ +g+++AeIrdps++g  +r +lg+f+taeeAa+a+++a+ +l+g+
  Medtr1g074310.1 20 RFRGVRRRP-WGKYAAEIRDPSKQG--TRMWLGTFDTAEEAARAYDRAAFNLRGH 71
                     69*******.**********98865..**************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000188.10E-302078No hitNo description
SMARTSM003802.8E-382084IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.2E-322079IPR001471AP2/ERF domain
PfamPF008474.5E-152071IPR001471AP2/ERF domain
PROSITE profilePS5103224.52078IPR001471AP2/ERF domain
SuperFamilySSF541716.34E-242179IPR016177DNA-binding domain
PRINTSPR003671.9E-112132IPR001471AP2/ERF domain
PRINTSPR003671.9E-114460IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 145 aa     Download sequence    Send to blast
MEDHQKGKHG KEEKGKEEVR FRGVRRRPWG KYAAEIRDPS KQGTRMWLGT FDTAEEAARA  60
YDRAAFNLRG HLAILNFPSE YYSKIRGSPP YPPHLAPPPY TSSSSHHAGG SSSGPQHRPI  120
FEFECLDDKI LEELLGSEEV KKKK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-31151309114Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr1g074310.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013468695.11e-103ethylene-responsive transcription factor ERF098
SwissprotQ9LTC55e-49ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBLA0A072VLL51e-102A0A072VLL5_MEDTR; Ethylene response factor
STRINGGLYMA20G34560.14e-70(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27033215
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23230.18e-37ERF family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]
  2. Van den Broeck L, et al.
    From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress.
    Mol. Syst. Biol., 2017. 13(12): p. 961
    [PMID:29269383]