PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr1g074270.1
Common NameMTR_1g074270
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family ERF
Protein Properties Length: 118aa    MW: 12869.9 Da    PI: 4.3196
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr1g074270.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP227.67.5e-091957355
              AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                     y+GVr d++r+              + +++lg+f taeeAa+a+++ + +++g
  Medtr1g074270.1 19 YRGVR-DSNRKG-------------QNKVWLGTFNTAEEAARAYDRDAFNMRG 57
                     55554.443333.............599*****************99999887 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103212.9581865IPR001471AP2/ERF domain
CDDcd000181.18E-141867No hitNo description
SMARTSM003803.8E-121871IPR001471AP2/ERF domain
SuperFamilySSF541711.57E-121966IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.9E-152267IPR001471AP2/ERF domain
PfamPF008479.0E-62457IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 118 aa     Download sequence    Send to blast
MSEDGSREGT KDDGGYVKYR GVRDSNRKGQ NKVWLGTFNT AEEAARAYDR DAFNMRGFLA  60
ILNFPNQYNM FAGAASDAAS GSGSSSSRIA NAGNGRVFDF EYLDDNLLED LLDDNLF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A5e-222210730114Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr1g074270.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013468692.14e-79ethylene-responsive transcription factor ERF096
SwissprotQ9LTC51e-22ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBLA0A072VL339e-78A0A072VL33_MEDTR; AP2 domain class transcription factor
STRINGSolyc03g005500.1.12e-25(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27033215
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43410.16e-11ERF family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]
  2. Van den Broeck L, et al.
    From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress.
    Mol. Syst. Biol., 2017. 13(12): p. 961
    [PMID:29269383]