PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr1g074250.1
Common NameMTR_1g074250
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family ERF
Protein Properties Length: 132aa    MW: 14502.9 Da    PI: 5.2461
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr1g074250.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.51.4e-171869255
              AP2  2 gykGVrwdkkrgrWvAeIrdpseng.kr.krfslgkfgtaeeAakaaiaarkkleg 55
                     +y+GVr+++ +g+++AeIrd    + k   +++lg+f taeeAa+a+++ + +++g
  Medtr1g074250.1 18 KYQGVRRRP-WGKFAAEIRDS---NrKGqNKVWLGTFNTAEEAARAYDRDAFNMRG 69
                     8********.**********3...322349******************99999887 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008475.2E-141869IPR001471AP2/ERF domain
PROSITE profilePS5103221.7731877IPR001471AP2/ERF domain
SMARTSM003809.6E-291883IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.7E-281879IPR001471AP2/ERF domain
SuperFamilySSF541713.14E-201878IPR016177DNA-binding domain
CDDcd000187.45E-241879No hitNo description
PRINTSPR003671.7E-101930IPR001471AP2/ERF domain
PRINTSPR003671.7E-104359IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 132 aa     Download sequence    Send to blast
MSEDGPRREA TDGGGHVKYQ GVRRRPWGKF AAEIRDSNRK GQNKVWLGTF NTAEEAARAY  60
DRDAFNMRGF LAILNFPNQY NMFAGAASDS GSSSSRIANA GNGSQVYEFE YLDDNLLEDL  120
LDVEGKKNTG P*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A7e-35131309128Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr1g074250.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013468690.17e-93ethylene-responsive transcription factor ERF096
SwissprotQ9LTC54e-35ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBLA0A072VLK92e-91A0A072VLK9_MEDTR; AP2 domain class transcription factor
STRINGSolyc03g005500.1.16e-37(Solanum lycopersicum)
STRINGPGSC0003DMT4000348714e-37(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27033215
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43410.11e-23ERF family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]
  2. Van den Broeck L, et al.
    From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress.
    Mol. Syst. Biol., 2017. 13(12): p. 961
    [PMID:29269383]