PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr1g072790.2
Common NameMTR_1g072790
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family NF-YB
Protein Properties Length: 177aa    MW: 19488.6 Da    PI: 5.6453
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr1g072790.2genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB184.48.9e-5828123297
            NF-YB   2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyreleg 95 
                      reqdrflPian+srimkk+lP+n+ki+kdak+t+qecvsefisf+tseas+kcq+ekrktingddllwa+atlGfedy+eplkvyl++yreleg
  Medtr1g072790.2  28 REQDRFLPIANISRIMKKALPSNGKIAKDAKDTMQECVSEFISFITSEASEKCQKEKRKTINGDDLLWAMATLGFEDYIEPLKVYLARYRELEG 121
                      89******************************************************************************************** PP

            NF-YB  96 ek 97 
                      ++
  Medtr1g072790.2 122 DS 123
                      97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.101.4E-5424135IPR009072Histone-fold
SuperFamilySSF471131.04E-4130136IPR009072Histone-fold
PfamPF008081.2E-293397IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006152.3E-216179No hitNo description
PROSITE patternPS0068506480IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006152.3E-218098No hitNo description
PRINTSPR006152.3E-2199117No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 177 aa     Download sequence    Send to blast
MADAPNQCEE SHESGGEQSP RGSSSASREQ DRFLPIANIS RIMKKALPSN GKIAKDAKDT  60
MQECVSEFIS FITSEASEKC QKEKRKTING DDLLWAMATL GFEDYIEPLK VYLARYRELE  120
GDSKGSVRNS DGSGRRDQVG GPPGQNAQFV HQGSLSYIDS QVHPQHLVMP SMQNHE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_B3e-4828118292Transcription factor HapC (Eurofung)
4g92_B3e-4828118292Transcription factor HapC (Eurofung)
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.143760.0flower| root
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in flowers and mature rosettes. {ECO:0000269|PubMed:11250072}.
Functional Description ? help Back to Top
Source Description
UniProtComponent of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr1g072790.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0513160.0BT051316.1 Medicago truncatula clone MTYF1_F2_F3_F41G-K-6 unknown mRNA.
GenBankBT1383200.0BT138320.1 Medicago truncatula clone JCVI-FLMt-10C19 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003590706.21e-130nuclear transcription factor Y subunit B-1
RefseqXP_024636101.11e-130nuclear transcription factor Y subunit B-1
SwissprotQ8VYK42e-75NFYB8_ARATH; Nuclear transcription factor Y subunit B-8
TrEMBLB7FGV11e-129B7FGV1_MEDTR; Nuclear transcription factor Y subunit B
STRINGAES609571e-126(Medicago truncatula)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37060.39e-78nuclear factor Y, subunit B8
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]
  2. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]