PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr1g070070.1
Common NameMTR_1g070070
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family ERF
Protein Properties Length: 147aa    MW: 16660.4 Da    PI: 5.1138
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr1g070070.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.63.7e-192071256
              AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                     +y+GVr+++ +g+++AeIrdp  +g  +r++lg+f taeeAa+a+++a+ +++g+
  Medtr1g070070.1 20 RYRGVRRRP-WGKFAAEIRDPARRG--ARVWLGTFLTAEEAARAYDRAAFEMRGA 71
                     59*******.**********95443..**************************95 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.99E-282079No hitNo description
SMARTSM003802.2E-342084IPR001471AP2/ERF domain
PROSITE profilePS5103224.8432078IPR001471AP2/ERF domain
PfamPF008473.9E-142070IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-312080IPR001471AP2/ERF domain
SuperFamilySSF541713.66E-232080IPR016177DNA-binding domain
PRINTSPR003674.0E-112132IPR001471AP2/ERF domain
PRINTSPR003674.0E-114460IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 147 aa     Download sequence    Send to blast
MEEENSKEKN DKQESPKEIR YRGVRRRPWG KFAAEIRDPA RRGARVWLGT FLTAEEAARA  60
YDRAAFEMRG ALAILNFPHE YSIVNSSSSS LAPNSSSASC YESSSTSNYQ SEHGKQVIEF  120
EYLDDKLLED LLDCDESETT RKNLPK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A8e-342012714114Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr1g070070.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013468509.11e-105ethylene-responsive transcription factor ERF098
SwissprotQ9LTC52e-43ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBLA0A072VLP31e-103A0A072VLP3_MEDTR; AP2 domain class transcription factor
STRINGVIT_07s0005g03210.t014e-48(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27033215
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23220.11e-25ERF family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]
  2. Van den Broeck L, et al.
    From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress.
    Mol. Syst. Biol., 2017. 13(12): p. 961
    [PMID:29269383]