PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr1g069960.1
Common NameMTR_1g069960
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family ERF
Protein Properties Length: 150aa    MW: 16421 Da    PI: 6.256
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr1g069960.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.68.4e-202677256
              AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                     +y+G+r+++ +g+++AeIrdp+     +r++lg+f+tae+Aa+a++aa+  ++g+
  Medtr1g069960.1 26 KYRGIRRRP-WGKFAAEIRDPTRK--GTRIWLGTFDTAEQAARAYDAAAFHFRGH 77
                     8********.**********8542..4***********************99996 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103225.4752684IPR001471AP2/ERF domain
CDDcd000186.90E-212685No hitNo description
Gene3DG3DSA:3.30.730.107.1E-332686IPR001471AP2/ERF domain
PfamPF008477.2E-142677IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-242685IPR016177DNA-binding domain
SMARTSM003807.4E-362690IPR001471AP2/ERF domain
PRINTSPR003678.6E-122738IPR001471AP2/ERF domain
PRINTSPR003678.6E-125066IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 150 aa     Download sequence    Send to blast
MEGDHKLVSN STNGNGNGNG NSDQIKYRGI RRRPWGKFAA EIRDPTRKGT RIWLGTFDTA  60
EQAARAYDAA AFHFRGHRAI LNFPNEYQAP NSSSSLPMPL TMPPPPSSNP PPSSSSSSSF  120
SSYTVDDGFD ELEFLDNKLL QELLQDGTQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-291687575Ethylene-responsive transcription factor ERF096
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.182620.0root
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr1g069960.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0514490.0BT051449.1 Medicago truncatula clone MTYF1_F2_F3_F41G-L-18 unknown mRNA.
GenBankBT1453980.0BT145398.1 Medicago truncatula clone JCVI-FLMt-16L17 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013468498.11e-107ethylene-responsive transcription factor ERF098
SwissprotQ9LTC58e-36ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBLB7FH841e-106B7FH84_MEDTR; Ethylene response factor
STRINGXP_004495105.12e-63(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27033215
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23230.13e-26ERF family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]
  2. Van den Broeck L, et al.
    From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress.
    Mol. Syst. Biol., 2017. 13(12): p. 961
    [PMID:29269383]