PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr1g062780.1
Common NameMTR_1g062780
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family C2H2
Protein Properties Length: 298aa    MW: 33325.1 Da    PI: 8.4937
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr1g062780.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.80.0016120142123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      y+C+ C+++F++   L  H  +H
  Medtr1g062780.1 120 YECKTCNRCFPSFQALGGHRASH 142
                      99**********99999998887 PP

2zf-C2H213.70.00018199221123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      ++C++Cg  Fs+   L  H+r+H
  Medtr1g062780.1 199 HECSICGAEFSSGQALGGHMRRH 221
                      78********************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.61E-5119150No hitNo description
PROSITE profilePS5015710.388120147IPR007087Zinc finger, C2H2
SMARTSM003550.14120142IPR015880Zinc finger, C2H2-like
PfamPF139122.1E-10120144IPR007087Zinc finger, C2H2
PROSITE patternPS000280122142IPR007087Zinc finger, C2H2
SuperFamilySSF576678.16E-6196223No hitNo description
Gene3DG3DSA:3.30.160.600.001197221IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139128.7E-13198222IPR007087Zinc finger, C2H2
PROSITE profilePS501579.743199221IPR007087Zinc finger, C2H2
SMARTSM003550.01199221IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280201221IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MQVLEDQVLM VSKDHTQQII KGKRTKRQRL PSPLRLTMPV SNSCNEGTSY DNNNNNSGGI  60
EFVKIDSRDR SEEEKEEEED LANCLILLAR GHNHRHDYQN THVSNHRDHN NNKSSNFYLY  120
ECKTCNRCFP SFQALGGHRA SHTKPNKANC NVAQQKQAVT TSSFVDDHYD PTMNTILSLQ  180
AFAATPITTI PTTKKSKVHE CSICGAEFSS GQALGGHMRR HRNLVNTSTT TTTTTTSMSL  240
SIGSPKSHEA KKPRNGFKLD LNLPAPEVDQ KDQSKFSFQP RENVIAFSNS SLVDCHY*
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr1g062780.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013468116.10.0zinc finger protein ZAT5
TrEMBLA0A072VL430.0A0A072VL43_MEDTR; C2H2-type zinc finger protein
STRINGXP_004515927.11e-114(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF58634141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03510.11e-50C2H2 family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]