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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
Previous version:
v3.0
v4.0
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr1g038650.1 | ||||||||
Common Name | MTR_1g038650 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | TCP | ||||||||
Protein Properties | Length: 236aa MW: 25831.5 Da PI: 8.5817 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 119.4 | 4.4e-37 | 26 | 193 | 2 | 114 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec..eaesssssasnsssg..... 88 ++kk +++++h+kv+gR+RR+R+++ caar+F+L++eLG+++d++tieWLl+qa+p+i+++tgt++++as++ ++++ + + Medtr1g038650.1 26 TVKKPPSKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPASFSslSEHKPFLQP-----Spfilg 114 589*************************************************************8888877732222222222.....123445 PP TCP 89 .....................................................kaaksaakskksqksaasalnlakes 114 ++++++++++++q++++++++ ++++ Medtr1g038650.1 115 krlrdddgdavsvaaptappglwrpdfaqlwsfaaaaqtppegfsvsqhnslfHHQQQQQQQQHQQQQQQHHHQQHHQQ 193 5555566666777777788888888888888876666666666666654333322222222222222222122222222 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51369 | 28.209 | 32 | 86 | IPR017887 | Transcription factor TCP subgroup |
Pfam | PF03634 | 8.1E-35 | 32 | 192 | IPR005333 | Transcription factor, TCP |
Sequence ? help Back to Top |
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Protein Sequence Length: 236 aa Download sequence Send to blast |
MSNHKETTTI TTTTDLVEPT SQNAITVKKP PSKDRHSKVD GRGRRIRMPI ICAARVFQLT 60 RELGHKSDGQ TIEWLLRQAE PSIIAATGTG TTPASFSSLS EHKPFLQPSP FILGKRLRDD 120 DGDAVSVAAP TAPPGLWRPD FAQLWSFAAA AQTPPEGFSV SQHNSLFHHQ QQQQQQQHQQ 180 QQQQHHHQQH HQQQQGSMGE ASAARLGNYL PGHLNLLASL SGGNGNSGRG DDEDR* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mtr.3429 | 0.0 | flower| glandular trichome| leaf| root| stem |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr1g038650.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC160925 | 0.0 | AC160925.39 Medicago truncatula clone mth2-176a22, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024639364.1 | 1e-173 | transcription factor TCP7 | ||||
Swissprot | Q9FMX2 | 8e-73 | TCP7_ARATH; Transcription factor TCP7 | ||||
TrEMBL | G7IBF3 | 1e-172 | G7IBF3_MEDTR; Putative transcription factor TCP family | ||||
STRING | AES59987 | 1e-173 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5469 | 31 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G23280.1 | 6e-51 | TCP family protein |
Link Out ? help Back to Top | |
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Phytozome | Medtr1g038650.1 |
Entrez Gene | 11423615 |
Publications ? help Back to Top | |||
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