PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr1g038650.1
Common NameMTR_1g038650
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family TCP
Protein Properties Length: 236aa    MW: 25831.5 Da    PI: 8.5817
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr1g038650.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP119.44.4e-37261932114
              TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec..eaesssssasnsssg..... 88 
                      ++kk +++++h+kv+gR+RR+R+++ caar+F+L++eLG+++d++tieWLl+qa+p+i+++tgt++++as++  ++++   +      +     
  Medtr1g038650.1  26 TVKKPPSKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPASFSslSEHKPFLQP-----Spfilg 114
                      589*************************************************************8888877732222222222.....123445 PP

              TCP  89 .....................................................kaaksaakskksqksaasalnlakes 114
                                                                           ++++++++++++q++++++++ ++++
  Medtr1g038650.1 115 krlrdddgdavsvaaptappglwrpdfaqlwsfaaaaqtppegfsvsqhnslfHHQQQQQQQQHQQQQQQHHHQQHHQQ 193
                      5555566666777777788888888888888876666666666666654333322222222222222222122222222 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136928.2093286IPR017887Transcription factor TCP subgroup
PfamPF036348.1E-3532192IPR005333Transcription factor, TCP
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
MSNHKETTTI TTTTDLVEPT SQNAITVKKP PSKDRHSKVD GRGRRIRMPI ICAARVFQLT  60
RELGHKSDGQ TIEWLLRQAE PSIIAATGTG TTPASFSSLS EHKPFLQPSP FILGKRLRDD  120
DGDAVSVAAP TAPPGLWRPD FAQLWSFAAA AQTPPEGFSV SQHNSLFHHQ QQQQQQQHQQ  180
QQQQHHHQQH HQQQQGSMGE ASAARLGNYL PGHLNLLASL SGGNGNSGRG DDEDR*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.34290.0flower| glandular trichome| leaf| root| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr1g038650.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1609250.0AC160925.39 Medicago truncatula clone mth2-176a22, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024639364.11e-173transcription factor TCP7
SwissprotQ9FMX28e-73TCP7_ARATH; Transcription factor TCP7
TrEMBLG7IBF31e-172G7IBF3_MEDTR; Putative transcription factor TCP family
STRINGAES599871e-173(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF54693153
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23280.16e-51TCP family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]