PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr1g023170.1
Common NameMTR_1g023170
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family ERF
Protein Properties Length: 272aa    MW: 29790.1 Da    PI: 4.6667
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr1g023170.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2582.3e-183988255
              AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                      ykGVr++  +g+WvAeIr+p   + r +r +lg+f t  eAa a++aa++kl+g
  Medtr1g023170.1 39 TYKGVRQRT-WGKWVAEIREP---N-RgARLWLGTFETSHEAALAYDAAARKLYG 88
                     69****999.**********8...3.35************************987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000185.62E-223898No hitNo description
Gene3DG3DSA:3.30.730.102.6E-303997IPR001471AP2/ERF domain
SuperFamilySSF541716.41E-213996IPR016177DNA-binding domain
PfamPF008471.6E-133988IPR001471AP2/ERF domain
SMARTSM003801.0E-3539102IPR001471AP2/ERF domain
PROSITE profilePS5103222.4313996IPR001471AP2/ERF domain
PRINTSPR003671.3E-94051IPR001471AP2/ERF domain
PRINTSPR003671.3E-96278IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    Send to blast
MMKSGMGIEE RKQLKRPAQA SSRKGCMRGK GGPENASCTY KGVRQRTWGK WVAEIREPNR  60
GARLWLGTFE TSHEAALAYD AAARKLYGSD AKLNLPELST PPQNTTSSPS PTPPQMQQQQ  120
QHPHIQIQPN NNNNINNSFN ICNNINMNNN NNNSPVFVSL SSQQVGGDIT PIYSSDNSVM  180
SFPLDSNSTI TNTMESKGME ISSDSFFGTV NYETMPVIDD DSIWTEAAMS LDAAISMDFP  240
MIVDDADGIY NSGANFAEVG AWDSLQTPWC M*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A6e-204096360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity-inducible transcription. {ECO:0000269|PubMed:11798174}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00240DAPTransfer from AT1G75490Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr1g023170.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By high-salt stress. {ECO:0000269|PubMed:11798174}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1595350.0AC159535.12 Medicago truncatula clone mth2-152f22, complete sequence.
GenBankAC1600130.0AC160013.22 Medicago truncatula clone mth2-162b23, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003589344.10.0dehydration-responsive element-binding protein 2D
SwissprotQ9LQZ24e-50DRE2D_ARATH; Dehydration-responsive element-binding protein 2D
TrEMBLG7I5V50.0G7I5V5_MEDTR; AP2 domain class transcription factor
STRINGAES595950.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF25623380
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75490.11e-42ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]