PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr0140s0010.1
Common NameMTR_0140s0010
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family Nin-like
Protein Properties Length: 239aa    MW: 27938.7 Da    PI: 5.2283
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr0140s0010.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK28.62.8e-091501673552
            RWP-RK  35 iCRqyGIkRWPhRkiksl 52 
                       +CR++GI+RWPhRk+ sl
  Medtr0140s0010.1 150 KCRELGIRRWPHRKLMSL 167
                       8**************997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS515199.898101188IPR003035RWP-RK domain
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
GIISEYLLMN DKFPIHDDGL EFEELMKCNS PHNPLYIEPM PSLEGYHQTM PHSQFKFWLY  60
LLINTVAADD YGISYDVEKG FGDWREIIND AAFGSDKLYL CYTNENSGNE IKKEVVEVKP  120
ERVERISDGN TKNLSRKIIS QYFYYANNTK CRELGIRRWP HRKLMSLQTL INNIQELGKE  180
DGLRSDEKFM DIEKLEEEMK LVEEMPDMQL QDHTKRLRQH WTAIVPAKNK YSSLTSVS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr0140s0010.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004508743.11e-46protein RKD1
TrEMBLA0A072TGT41e-178A0A072TGT4_MEDTR; RWP-RK domain protein (Fragment)
STRINGAES912541e-163(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF61843052
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G74480.13e-19RWP-RK domain-containing protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]