PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 64742
Common NameMICPUN_64742
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas
Family AP2
Protein Properties Length: 715aa    MW: 74314.6 Da    PI: 10.2672
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
64742genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP234.74.5e-11219267255
    AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
            +++GV+++k++gr++A+I+d      r ++ +lg+f  a  Aa a+++ + k++g
  64742 219 RFRGVTRYKRTGRYEAHIWD------RgRQKHLGSFAAATAAASAYDKTAIKFRG 267
            59******************......55**********************99987 PP

2AP2301.3e-09599648153
    AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr...krfslgkfgtaeeAakaaiaarkkl 53 
            s +kGV++++++grW+A+ +       r   k+ +lg f+ + eAa+a + + +k+
  64742 599 SSHKGVTRHRRSGRWEAHMWS------RelgKQLYLGGFDAECEAARAFDVCSLKK 648
            579***************888......2245**********55*****99998775 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003802.5E-18219282IPR001471AP2/ERF domain
PROSITE profilePS5103215.936219276IPR001471AP2/ERF domain
SuperFamilySSF541714.84E-11219277IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.3E-11219277IPR001471AP2/ERF domain
CDDcd000188.81E-12599647No hitNo description
SMARTSM003803.9E-7600687IPR001471AP2/ERF domain
PROSITE profilePS5103213.38600669IPR001471AP2/ERF domain
SuperFamilySSF541712.35E-8600650IPR016177DNA-binding domain
PfamPF008472.1E-6600649IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.6E-8601647IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 715 aa     Download sequence    Send to blast
MSLEPAELSP REAAELILSL GGGPAAGRAR APAPPHDTRA PRVKAKAKKD FPRGGGGGGG  60
GGERATGTPR RPPGAPRPAR PRTDEPIDPS SGGSMKRSRL DLTEDLTRDA TPPLHPPAPS  120
PPVASRPDEP ERKRQRRAPV RIQPDVEDDA RMGNRGVLGL ERLSREQQRE FWRLAARTGE  180
SAREEGEAKL SKEEAKGEHA DADQSTKVAG VDPTRARGRF RGVTRYKRTG RYEAHIWDRG  240
RQKHLGSFAA ATAAASAYDK TAIKFRGWDA SPLNFPAESY AADDEFRRDL ATLTKGEFVA  300
KTCAAGRAGR RAGGGGGGEG PEAPSPPPRS TPPASGLSPG GLTLADALVR AQMLEDPGCA  360
PKPQHVLTLA PPGATAETSH SGSESESGGS GSGAGSGTNS DKSGADSDSR DPRPLDPSRI  420
VAVDPPIGST PVGTPSAPWV GTPSANPPPR RADVLALARA FIVGGVVTAE VATNFPRELL  480
AAASRELELA NARGRAVGCR GGCRGGADDD GAVDGEDANA RLLNKATRAA AKAMADSTVD  540
VAGAPAADPP APPATSAPPS APHRHPPSPP GPTRASPCTP AHPPRARSNA GFKRGDTSSS  600
HKGVTRHRRS GRWEAHMWSR ELGKQLYLGG FDAECEAARA FDVCSLKKWR DERGASSAAA  660
AAAATGNFPF GTSKAPGLNF PPGEYRDLVP ALDSMSLEGV IAAVRQGKLR EHRA*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0013340.0CP001334.1 Micromonas sp. RCC299 chromosome 16, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002506836.10.0predicted protein
TrEMBLC1EIY20.0C1EIY2_MICCC; Uncharacterized protein
STRINGXP_002506836.10.0(Micromonas sp. RCC299)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G39250.18e-16AP2 family protein
Publications ? help Back to Top
  1. Worden AZ, et al.
    Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas.
    Science, 2009. 324(5924): p. 268-72
    [PMID:19359590]