PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 56794
Common NameMICPUN_56794
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas
Family AP2
Protein Properties Length: 375aa    MW: 40107.1 Da    PI: 5.4614
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
56794genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP225.43.5e-08240288253
    AP2   2 gykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkl 53 
            gy GV++ +++ rW+A + d       +  ++ lg+f+ +e Aa+a++aa++kl
  56794 240 GYLGVTRPPWTTRWEANLVDeH-----TgGHVFLGNFDQKESAARAHDAAKLKL 288
            799**************88844.....359*********************997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003801.8E-6240310IPR001471AP2/ERF domain
PROSITE profilePS5103213.261240304IPR001471AP2/ERF domain
SuperFamilySSF541715.23E-9240288IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.106.7E-10241303IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 375 aa     Download sequence    Send to blast
MGGTDGSPGS TTGRHHRDEE ERSWLEMLAA DDDVEGPSLL RAPDVLTRNG ASPDAPVLDD  60
DGLLLRPLGS LGDDDDDFAC GGDVCDLVHR APVHGGIARG VISALRRSAT DVGGELGRRR  120
ADVRAAASPR GVAPRGEARR RPPDRGGGGH TRGQHSPLAG GPGDASLVER LRDSLCPDRA  180
EDLSERRGAR GGLRRARTLP TNLHAHDDDL PLDPRAAQAD VVAARAVEAA AQAASPRPFG  240
YLGVTRPPWT TRWEANLVDE HTGGHVFLGN FDQKESAARA HDAAKLKLAL GDDEPVPQDQ  300
LNFDASDYRE ELSAMTECTF EDFVKTLVTH SYGGSRSAGH SKFRGVFARE DGLWEAKLDA  360
EDAGGAREDR RWKK*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0013240.0CP001324.1 Micromonas sp. RCC299 chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002500875.10.0predicted protein
TrEMBLC1E1980.0C1E198_MICCC; Uncharacterized protein
STRINGXP_002500875.10.0(Micromonas sp. RCC299)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54320.32e-14AP2 family protein
Publications ? help Back to Top
  1. Worden AZ, et al.
    Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas.
    Science, 2009. 324(5924): p. 268-72
    [PMID:19359590]