PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 22504
Common NameMICPUCDRAFT_22504
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas; Micromonas pusilla
Family C2H2
Protein Properties Length: 60aa    MW: 7092.35 Da    PI: 9.8683
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
22504genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.50.000441435323
             ETTTTEEESSHHHHHHHHHH.T CS
  zf-C2H2  3 CpdCgksFsrksnLkrHirt.H 23
             C +C++ F +   L++H+r  H
    22504 14 CFYCDREFEDEKILQNHQRAkH 35
             99*****************888 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF121717.0E-51332IPR022755Zinc finger, double-stranded RNA binding
PROSITE patternPS0002801435IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.7E-43459IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009910Biological Processnegative regulation of flower development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0046872Molecular Functionmetal ion binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 60 aa     Download sequence    Send to blast
MGKKKKFAAD RPWCFYCDRE FEDEKILQNH QRAKHFKCLH PGCNRKLVTA NGMAIHMLTV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003063518.18e-40predicted protein, partial
SwissprotQ9C5G02e-23SUF4_ARATH; Protein SUPPRESSOR OF FRI 4
TrEMBLC1N6E29e-40C1N6E2_MICPC; Predicted protein (Fragment)
STRINGSolyc02g032120.2.12e-24(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP41351011
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30970.11e-24C2H2 family protein
Publications ? help Back to Top
  1. Worden AZ, et al.
    Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas.
    Science, 2009. 324(5924): p. 268-72
    [PMID:19359590]