PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Mapoly0159s0029.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Marchantiophyta; Marchantiopsida; Marchantiidae; Marchantiales; Marchantiaceae; Marchantia
Family E2F/DP
Protein Properties Length: 617aa    MW: 67431.1 Da    PI: 8.5119
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Mapoly0159s0029.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP74.11.5e-2382147171
              E2F_TDP   1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71 
                          rk+ksL+ll+++fl+l+ +++ + ++l+e+a++L    v  +rRRiYDi+NVLe+++++ +k+kn+++w+g
  Mapoly0159s0029.1.p  82 RKDKSLGLLCENFLNLYGNENGECISLDEAATRL---GV--ERRRIYDIVNVLEGMEILVRKAKNRYTWHG 147
                          79*****************999************...**..****************************98 PP

2E2F_TDP74.31.3e-23256336171
              E2F_TDP   1 rkeksLrlltqkflkllekseegivtlnevakeLvse.....dvknkrRRiYDilNVLealnliek.....kekneirwkg 71 
                          r+eksL+ll+qkf++l+  s+++iv+l+++ak L+ +     + k+k+RR+YDi+N+L++l+liek     ++k++++w g
  Mapoly0159s0029.1.p 256 RREKSLGLLSQKFVQLFLVSQTQIVSLEDAAKILLGDsteacKLKTKVRRLYDIANILSSLQLIEKthmteNRKPAFKWLG 336
                          689***************************************99**********************9999999******87 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.102.1E-2778148IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467853.36E-1681146IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013721.2E-3082147IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023191.0E-2083147IPR003316E2F/DP family, winged-helix DNA-binding domain
Gene3DG3DSA:1.10.10.109.4E-25252337IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013725.0E-32256336IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023191.0E-19258336IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467852.81E-12258337IPR011991Winged helix-turn-helix DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 617 aa     Download sequence    Send to blast
MRVEAPVPLM HPAKVRYADC LENSSSSTEV SGCKGRPFGS KQIQPPRSRC ETSEELSHPS  60
IPEMENRGPS DGEARMQASY NRKDKSLGLL CENFLNLYGN ENGECISLDE AATRLGVERR  120
RIYDIVNVLE GMEILVRKAK NRYTWHGFAR LPQALQAMKE AALREYGLDG FRGTAAATEE  180
KDEAGSSGDE NNCVKTKGLS SCKAGKSSND SYKSSPSSPF SEAGDSQCEP EGNHNEAVSS  240
LPDQRHKVTK EKADCRREKS LGLLSQKFVQ LFLVSQTQIV SLEDAAKILL GDSTEACKLK  300
TKVRRLYDIA NILSSLQLIE KTHMTENRKP AFKWLGASSE GQFCTKRVFS NRLTSSNSSA  360
PKERRGLKRS SSKGGESAYA QQSAPKRPNA KPLQVLPVNV PIRERINKPV PVYPTMPPEM  420
FARRESLIPA ALSSGLPKGV TLGPVGGWRE WNDGAANNSP AKEVSKQPDP VSTAQTSGHC  480
SPSTSAANLV PPPFPGCPCA HGGSVDRNFL PVLPAHSGMC FPSFWPFQAM RQLVAGFQFP  540
PCDPSQLSDQ GTADCSLRME GMFTAAAMQY QNEALGQLFN HYVETWRSWY QQAVSMSPGP  600
FFEPPTKSCD SMKSSS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4yo2_A1e-45823284228Transcription factor E2F8
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_001771035.11e-132predicted protein
TrEMBLA9SXC91e-132A9SXC9_PHYPA; Predicted protein
STRINGPP1S132_65V6.11e-132(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP24741634
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01330.12e-58DP-E2F-like protein 3