PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Mapoly0096s0050.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Marchantiophyta; Marchantiopsida; Marchantiidae; Marchantiales; Marchantiaceae; Marchantia
Family C2H2
Protein Properties Length: 448aa    MW: 49081.2 Da    PI: 8.2116
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Mapoly0096s0050.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.89e-06283302120
                          EEETTTTEEESSHHHHHHHH CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                          ++Cp C+k+F+r  n++ H+
  Mapoly0096s0050.1.p 283 FSCPVCSKTFNRYNNMQMHM 302
                          89*****************9 PP

2zf-C2H212.60.00043367389123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          + C +C+k F  + + ++H +++
  Mapoly0096s0050.1.p 367 FMCRKCNKAFAVRGDWRTHEKNC 389
                          89*****************9987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.99E-5279305No hitNo description
Gene3DG3DSA:3.30.160.603.2E-6283302IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.054283305IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.242283310IPR007087Zinc finger, C2H2
PROSITE patternPS000280285305IPR007087Zinc finger, C2H2
SMARTSM00355220330362IPR015880Zinc finger, C2H2-like
SuperFamilySSF576673.55E-6349387No hitNo description
Gene3DG3DSA:3.30.160.601.4E-5354387IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM0035556367387IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009860Biological Processpollen tube growth
GO:0010500Biological Processtransmitting tissue development
GO:1990058Biological Processfruit replum development
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 448 aa     Download sequence    Send to blast
MSSRYHAQSS TVAVPRALSS ITAHPLPFCE WLKPHLAPPV TQLPVAIPFT TEDNAGTSFS  60
VSGPSSGADS PASGASHYNM FGGAHHQFFQ TATTHYNHQR RCPSPGPSRT AQPLPFLSLS  120
PPTNNNNNNT SGGSSSNNHH HQHHNSHNSH GSSGAAAAST TTASKYQQSQ NQNHNHNHNH  180
NQEEVPLRTA ILLPSASSSG PVDDEPDENV TVALHIGPPT SSDCSLMSSL RSSVVEGMMG  240
NLNYESPMGG LDKDRFNRAR GRLPDGQYWI PTPAQILVGP TQFSCPVCSK TFNRYNNMQM  300
HMWGHGSQYR KGPESLRGTQ PTAMLRLPCY CCAQGCRNNI DHPRAKPLKD FRTLQTHYKR  360
KHGQKPFMCR KCNKAFAVRG DWRTHEKNCG KLWYCICGSD FKHKRSLKDH IRAFGNGHAP  420
HGVDSCEDEE ENASEDDADE DMSAGSQ*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269|PubMed:17600712, ECO:0000269|PubMed:23515580, ECO:0000269|PubMed:25039392}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0711041e-137AK071104.1 Oryza sativa Japonica Group cDNA clone:J023078D20, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024385058.11e-148zinc finger protein WIP6-like
RefseqXP_024385059.11e-148zinc finger protein WIP6-like
SwissprotQ9SVY11e-117ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBLA0A176WN280.0A0A176WN28_MARPO; Uncharacterized protein
TrEMBLA0A1S5T4720.0A0A1S5T472_MARPO; WIP
STRINGPP1S203_59V6.11e-147(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP4101597
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57670.11e-112C2H2 family protein
Publications ? help Back to Top
  1. Crawford BC, et al.
    Plant development. Genetic control of distal stem cell fate within root and embryonic meristems.
    Science, 2015. 347(6222): p. 655-9
    [PMID:25612610]
  2. Boex-Fontvieille E, et al.
    An Ethylene-Protected Achilles' Heel of Etiolated Seedlings for Arthropod Deterrence.
    Front Plant Sci, 2016. 7: p. 1246
    [PMID:27625656]