PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Mapoly0083s0069.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Marchantiophyta; Marchantiopsida; Marchantiidae; Marchantiales; Marchantiaceae; Marchantia
Family C2H2
Protein Properties Length: 621aa    MW: 66321.6 Da    PI: 7.6018
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Mapoly0083s0069.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H219.91.9e-06419440223
                          EETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                           C+ Cgk F+r  nL+ H+r+H
  Mapoly0083s0069.1.p 419 FCNLCGKGFKRDANLRMHMRSH 440
                          6********************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.23E-6415442No hitNo description
SMARTSM003550.0015418440IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.591418445IPR007087Zinc finger, C2H2
PROSITE patternPS000280420440IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.4E-6420448IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM00355100468501IPR015880Zinc finger, C2H2-like
SMARTSM0035544506528IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 621 aa     Download sequence    Send to blast
MAEFPHFRQK MEDTSHNPFS SSAAASMNFS MGRMHPQQAH SHGQPPIMRQ TFSQVHASAN  60
ASSIGARNAG RRPEAGNMQD GINPQMGHGH PGVHASLGLN HQQQQQNHQN HQNHLNLQQF  120
MEIGQVHMLS GDGASGGAGK GGQFAIGDPN LHAALADIQQ KINKMQEIVR MNGEGVQTNL  180
QQQQQVASAV SLISQVTAAI SEGMLNQNQT QNLSMSDSSQ LSHLFGACSS STGFNFFDHP  240
GSSPVNADMV VGNNNAFSSL PGRMGGNNHD QNTNNLNALG HGQSSMSGTP SATAGDPIFG  300
HGAVTTGSGS SVHPSETVGV GNLRQPPPFN NRMAARPGAG SGMNGSGKAS INRSSPGVMV  360
PSNSASGSHG SEDQEMGVRS RGGASRDDFD DGEGENLVDG SYQLVELDDQ EILAEHTHFC  420
NLCGKGFKRD ANLRMHMRSH GDEYKTPEAL ARPQKPIDEQ TPEIPKRFSC PHVGCKRNVK  480
HRKFQPLKSL LCVKNHYRRS HCAKNLACSK CKVKKFSVVA DLKTHEKHCG CDKWQCSCGT  540
TFSRKDKLFG HVSLFVGHSP AALPLPENLA ENSAGSLEIV DMAPVGSNVD SGLAESTSMV  600
QQGLDSQVSG GYVNWTHQLF *
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A176VD520.0A0A176VD52_MARPO; Uncharacterized protein
TrEMBLA0A2R6WJV40.0A0A2R6WJV4_MARPO; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP8301663
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34370.31e-79C2H2 family protein