PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Mapoly0070s0095.3.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Marchantiophyta; Marchantiopsida; Marchantiidae; Marchantiales; Marchantiaceae; Marchantia
Family C2H2
Protein Properties Length: 398aa    MW: 42120 Da    PI: 8.3446
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Mapoly0070s0095.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.20.00113558123
                         EEETTTTEEESSHHHHHHHHHH.T CS
              zf-C2H2  1 ykCpdCgksFsrksnLkrHirt.H 23
                         +kC+ C+k  s+   +++H    H
  Mapoly0070s0095.3.p 35 FKCHVCHKKLSTAGGMVVHVLQvH 58
                         89*****************87655 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5080811.285665IPR003656Zinc finger, BED-type
SMARTSM00355151134IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002801334IPR007087Zinc finger, C2H2
SMARTSM003550.0463558IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002803758IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009910Biological Processnegative regulation of flower development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0046872Molecular Functionmetal ion binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 398 aa     Download sequence    Send to blast
MGKKKKKSFK VWCFYCEREF EDEKILIQHQ KAKHFKCHVC HKKLSTAGGM VVHVLQVHKE  60
SITKVPNAKP ERESTEPEIF GMEGIPPEIL AAHDGDQGGL DDDEKPAKVA RVEIPPSSPF  120
GGLVMGPIAL GMASQPMYSP MPPVYMSQQP SGPRPPSWPP QPPNSHGWNH MHPGQPPMHP  180
PRPPPPPQPL FPIQAPNPPS MSSASALPPA QPLFPIRPAA PPSSAPPSQP LFPVNGTPST  240
GSSSSSSSVG TSSSGVPLRS PGNGQTAVDS TSGAGSLPGG QSSVTSATMV GRPPSLPFGG  300
VPNLPPSGSH MYASAPSTGG PSIGPPPVIS NKPPGPPGLT NEVYLVWDDE ILSMEERRLS  360
LPQYQVLDET SQMNTIEAAF DRRILEGRLA GRMGFRV*
Functional Description ? help Back to Top
Source Description
UniProtSequence-specific DNA binding factor that recognizes the 5'-CCAAATTTTAAGTTT-3' sequence. Recruits the FRI-C complex to the FLC promoter. Required for FRI-mediated FLC activation, but has no effect on the expression of MAF1, MAF2, MAF3, MAF5, UFC and CO. Dispensable for the reactivation of FLC in early embryogenesis, but required to maintain high levels of FLC expression in later embryonic and vegetative development. {ECO:0000269|PubMed:17079264, ECO:0000269|PubMed:17138694, ECO:0000269|PubMed:19121105, ECO:0000269|PubMed:21282526}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Not regulated by photoperiod or vernalization. {ECO:0000269|PubMed:17079264, ECO:0000269|PubMed:17138694}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010914258.11e-131protein SUPPRESSOR OF FRI 4 isoform X2
SwissprotQ9C5G01e-106SUF4_ARATH; Protein SUPPRESSOR OF FRI 4
TrEMBLA0A2R6WP580.0A0A2R6WP58_MARPO; Uncharacterized protein
STRINGPP1S162_133V6.11e-118(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30970.13e-55C2H2 family protein
Publications ? help Back to Top
  1. Ding L,Kim SY,Michaels SD
    FLOWERING LOCUS C EXPRESSOR family proteins regulate FLOWERING LOCUS C expression in both winter-annual and rapid-cycling Arabidopsis.
    Plant Physiol., 2013. 163(1): p. 243-52
    [PMID:23899645]
  2. Resentini F, et al.
    SUPPRESSOR OF FRIGIDA (SUF4) Supports Gamete Fusion via Regulating Arabidopsis EC1 Gene Expression.
    Plant Physiol., 2017. 173(1): p. 155-166
    [PMID:27920160]