PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Mapoly0069s0060.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Marchantiophyta; Marchantiopsida; Marchantiidae; Marchantiales; Marchantiaceae; Marchantia
Family C2H2
Protein Properties Length: 302aa    MW: 33115.4 Da    PI: 6.5854
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Mapoly0069s0060.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.45.9e-06120142123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          ++C+ Cg+ F r  nL+ H r H
  Mapoly0069s0060.1.p 120 FTCEVCGRGFQREQNLQLHKRGH 142
                          89******************988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.16E-6120142No hitNo description
SMARTSM003550.0038120142IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.602.4E-5120142IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.676120142IPR007087Zinc finger, C2H2
PROSITE patternPS000280122142IPR007087Zinc finger, C2H2
SMARTSM00355200163193IPR015880Zinc finger, C2H2-like
SuperFamilySSF576672.16E-6193218No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MLGEVESVTD KMASSSCTSP SVNEPMSGTE PTSADSVSEE ELSLDVKPII VETTQAPSCT  60
ELVSVQLPAI NTTTTSATLN VQNNEKQQGV KRKRNLPGTP DPDAEVVALS PKTLMATHKF  120
TCEVCGRGFQ REQNLQLHKR GHNLPGSLKP RANKDKEIRK KVYVCPEPTC VHHDPARALG  180
DLTGIKKHFC RKHGEKKWKC DKCCKKYAVL SDWKAHSKTC GTRDYKCECG SIFYRRDSFV  240
THKAFCDELA EESARLAAGS SEPPAPVLLL DAMPPEDKDE PVSYRQLLGE DDIDDNDQAG  300
A*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C1e-30194258367Zinc finger protein JACKDAW
5b3h_F1e-30194258367Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that regulates tissue boundaries and asymmetric cell division (PubMed:17785527, PubMed:25829440). Contributes to the sequestration of 'SHORT-ROOT' to the nucleus (PubMed:17785527, PubMed:25829440). Interacts with the SCR and MGP promoters (PubMed:21935722). Does not show transcription activity by itself, but regulates the transcription of downstream genes through interaction with other transcription factors (PubMed:21935722). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). Positively involved in gibberellic acid (GA) signaling (PubMed:24821766). {ECO:0000269|PubMed:17785527, ECO:0000269|PubMed:21935722, ECO:0000269|PubMed:24821766, ECO:0000269|PubMed:25829440}.
UniProtTranscription factor that, together with JKD, regulates tissue boundaries and asymmetric cell division in roots by a rapid up-regulation of 'SCARECROW' (SCR), thus controlling the nuclear localization of 'SHORT-ROOT' (SHR) and restricting its action (PubMed:25829440). Confines CYCD6 expression to the cortex-endodermis initial/daughter (CEI/CEID) tissues (PubMed:25829440). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). {ECO:0000269|PubMed:24821766, ECO:0000269|PubMed:25829440}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by the transcription factor JKD, and down-regulated by SHR, SCR and itself. {ECO:0000269|PubMed:21935722}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024390144.11e-102protein indeterminate-domain 2-like isoform X6
SwissprotQ944L31e-100IDD9_ARATH; Zinc finger protein BALDIBIS
SwissprotQ9ZWA61e-100IDD3_ARATH; Zinc finger protein MAGPIE
TrEMBLA0A2R6WPE70.0A0A2R6WPE7_MARPO; Uncharacterized protein
STRINGERN015111e-101(Amborella trichopoda)
STRINGPP1S43_228V6.11e-101(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP9516242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03840.17e-93C2H2 family protein
Publications ? help Back to Top
  1. Muñoz-Strale D,León G
    Identification of two highly specific pollen promoters using transcriptomic data.
    Plant Physiol. Biochem., 2014. 83: p. 292-9
    [PMID:25208507]
  2. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]