PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Mapoly0068s0079.2.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Marchantiophyta; Marchantiopsida; Marchantiidae; Marchantiales; Marchantiaceae; Marchantia
Family C2H2
Protein Properties Length: 616aa    MW: 68499.9 Da    PI: 8.1152
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Mapoly0068s0079.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.17.6e-06259283123
                          EEET..TTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                          y+C+   C+k+Fs +s LkrH   H
  Mapoly0068s0079.2.p 259 YVCHweGCTKRFSERSKLKRHFLIH 283
                          9********************8877 PP

2zf-C2H2188.1e-06289313123
                          EEET..TTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                          + C    Cgk Fs   nL++H++tH
  Mapoly0068s0079.2.p 289 FICVyeGCGKAFSLDFNLRSHMKTH 313
                          6788889*****************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576679.99E-6227266No hitNo description
SMARTSM003552230254IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.785230254IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.3E-5230255IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280232254IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.5E-14257281IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0011259283IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015714.96259288IPR007087Zinc finger, C2H2
PROSITE patternPS000280261283IPR007087Zinc finger, C2H2
SuperFamilySSF576675.8E-15270320No hitNo description
Gene3DG3DSA:3.30.160.602.6E-21282316IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0055289313IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015713.277289318IPR007087Zinc finger, C2H2
PROSITE patternPS000280291313IPR007087Zinc finger, C2H2
SMARTSM003552.4318343IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.5E-4318341IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280320343IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 616 aa     Download sequence    Send to blast
MSLAGLGGMP NYAKTEPVVS MDDEPKTVEK NLATCKVEDI SVLESKVGHS SFGNEIDRTV  60
EEKRTRICVE SRGERRLQVK VDEGAASGES GPRSTGGGRE RCRGCGVREE PRKNELCESC  120
KQEGSGNFEG KVTRSSTRRR LGVQPVTPRL EEPRAVRANR GMKRRFPGDE SDDNCDKRKR  180
TRVRSISKVC GPNAQQQSGS ETSGKGKEAI DKDWKPSVRG KRRGRQSEVF LCNVEGCEKS  240
FVDAVALYNH GRVHGDRPYV CHWEGCTKRF SERSKLKRHF LIHTGEKPFI CVYEGCGKAF  300
SLDFNLRSHM KTHTGEYHEC PHPGCEKRYC QEYKLRAHIC KEHKGAGKSS DNGGRLAKED  360
SVISSNDKAA KKKERAEQLE LRRAKLEKCK EGKRKRIQEL EAELEGEMKE LTKLDKALRK  420
VTREQEEEEF EGCVEQDLLS DNAGEAELGE VYGEEKEVVM FAHKLPTADQ GARLMNQVVL  480
IQGPTPPLSP SISSSQPFLM SRVSTLDSTS PTESGLHSHH STHLLPYSVT PICQLSMDSL  540
FGDRRNSQNL VSFVGSQGLS MSKDRLGDPH GGGVSQAFSA NCQSSISFIH GEQSSQCEPP  600
VSQLFTYQEQ PCLQD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ubd_C4e-292323398114PROTEIN (YY1 ZINC FINGER DOMAIN)
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1162179KRRFPGDESDDNCDKRKR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2R6WPS60.0A0A2R6WPS6_MARPO; Uncharacterized protein
STRINGPP1S577_1V6.11e-89(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G06634.22e-46C2H2 family protein